Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2121 ATGGAGAAGAACATCCCTGATCCAGATGACTTCAAGAAGCCAATGGCCTTCTTTCTCGTACGCCACCATTCTGATCAGCTTCAATCCATTGTTTCTTCTCCCGATTCCGACCTTCACTTCCCTCTTTTCGTCGATTTTGCAGAATTGTTTGATGAGGAACCTCGCGTTGCTAGTGTCCTCTTTGCTCAACCCAATACCTATTTGCGAGTATTCGACGCGGCTGCCATTTGGGCACAGCAAATTGTATTGGCGGAGGGTAAGAAAGGGGTGGAGAAAAAGTCCATTCATGTTCGTATCTATACCAGTGGCTCAGCCCTTGAATTCCCTGAAACTTTTCCAAGCATAGGACGTGTCCGCGTGCAGCACCATGGAATTCTTCTCACTCTGAAAGGGATAGTGACCAGGTCTGGAGCAATCAAAATGCATGAAGGGGAGAGGACGTACATGTGTCAAAAATGCAAAAACAGTTTCCCAGTTCATCCTTTGGTGGAAGCTAGAAACTCCATATCATTACCTTCAATTTGCCCAATTAAGAATTCCAAGCCCTGTGCAGGCACGAAATTCCAGTATGTAGAGAATACTATAGTATGCAATGATTATCAGGAGATAAAAATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATTCCTCGTTCAATTCTTGTCATCTTAAAGGACGACCTCGTTGATGTTGTTAAAGCTGGAGACGATGTGATTGTCACTGGTGTCTTAACAGCAAAATGGGCTCCAGAGTTGAAGGATGTGCGTTGTGACCTTGATCCTGTATTAATTGCCAACAATGTAAGGAGAGTCAATGAACTGAAGTCAGAAATTGATATTTCTGATGATATTGTTATGAAATTCAAGCAGTTTTGGGCTCACTTCAAAGATTCACCTCTAAAAGGGAGGAATGCTATTCTGCGAGGAATTTGCCCCCAAGTATTTGGCCTTTTCACTGTCAAGTTGGCTGTTGCATTAACTCTTATTGGAGGCGTGCAACATGTGGATGCTTCTGGAACTAGGATAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGTACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGTGCAACCGATCTGTTATTACCACTGGACTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCAGTGAAGGATGGAGGGGAATGGATGTTGGAAGCTGGAGCTCTTGTTTTGGCTGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAGCATGATAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTCAGCACTAGAACAACTGTATTTGGTGCCACAAATCCCAAGGGGCAGTACGATCCAGATCAACCTCTGTCTGTCAATACAACACTCTCCGGTCCTTTATTAAGCAGGTTCGATATTGTCCTTGTTCTATTGGATACAAAAAATCCTGATTGGGATGCAGTGGTTTCATCTCATATTCTTTCCGAGGCAGAACCGGATAGCAGAACTGATGATGAAGGTCTGGTAAATAGCTGGCCACTTGCTACACTCAAGAGGTACATACACTATGTGAAAGAACATTTCAGACCAGTCCTAACGAGAGAGGCTGAAATAGTTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCAACTCATAATGCAGCTAGAACAACTGTCCGCATGTTGGAAAGTTTGATACGCCTAGCACAAGCCCATGCAAGACTCATGTTCAGAAATGAGGTGACTCAGCTAGATGCCATAACTGCTATTTTATGCATAGAATCATCCATGACTACCTCAGCTATCGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTTACTGACAACCCTGATCAAGAATATGCGAAACAAGAAATATTGATCCGAGAAAAGTTGAATAGTGTGGAGAGTGAAGGCTAA 1965 0.4331 MEKNIPDPDDFKKPMAFFLVRHHSDQLQSIVSSPDSDLHFPLFVDFAELFDEEPRVASVLFAQPNTYLRVFDAAAIWAQQIVLAEGKKGVEKKSIHVRIYTSGSALEFPETFPSIGRVRVQHHGILLTLKGIVTRSGAIKMHEGERTYMCQKCKNSFPVHPLVEARNSISLPSICPIKNSKPCAGTKFQYVENTIVCNDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGVLTAKWAPELKDVRCDLDPVLIANNVRRVNELKSEIDISDDIVMKFKQFWAHFKDSPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTRIRGESHLLLVGDPGTGKSQFLKFAAKLCNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSEAEPDSRTDDEGLVNSWPLATLKRYIHYVKEHFRPVLTREAEIVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTQLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYAKQEILIREKLNSVESEG* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2121 654 SUPERFAMILY Nucleic acid-binding proteins 39 253 IPR012340 -
Pvu6g2121 654 PRINTS Mini-chromosome maintenance (MCM) protein family signature 344 359 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pvu6g2121 654 PRINTS Mini-chromosome maintenance (MCM) protein family signature 402 416 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pvu6g2121 654 PRINTS Mini-chromosome maintenance (MCM) protein family signature 430 443 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pvu6g2121 654 PRINTS Mini-chromosome maintenance (MCM) protein family signature 480 488 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pvu6g2121 654 PANTHER DNA HELICASE MCM9 33 650 - -
Pvu6g2121 654 Gene3D - 278 616 IPR027417 -
Pvu6g2121 654 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 33 650 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pvu6g2121 654 SMART AAA_5 345 494 IPR003593 -
Pvu6g2121 654 Gene3D - 142 198 - -
Pvu6g2121 654 CDD MCM9 306 610 - -
Pvu6g2121 654 Gene3D - 118 247 IPR012340 -
Pvu6g2121 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 620 IPR027417 -
Pvu6g2121 654 Pfam MCM OB domain 117 246 IPR033762 -
Pvu6g2121 654 ProSiteProfiles MCM family domain profile. 303 506 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pvu6g2121 654 Pfam MCM AAA-lid domain 529 610 IPR041562 -
Pvu6g2121 654 SMART mcm 111 612 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pvu6g2121 654 Pfam MCM P-loop domain 305 508 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2121 Pvu-Chr6 30789500 30800467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2121 15 635 Core DNA Replication Machinery Family AT2G14050 74.960 0.0 977
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2121 K10738 - gmx:100776255 1115.14