Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2111 ATGGGTCTGCGTCATCTCACAAACTTGATGACGCCATTGCCACAACTCTGTGCCTCACTTTGTCATGTCAAGAAGTCTGAGGCTTGTTCACCAGATTGCGAAATTTGCCTCAGGATCTGCCTCACCAATCCCCAATACCCTAATTATGATTCTCCTCCGGCGGCGCCGCCGCCGCCGCCACAACTTCCGCCTTTCAATCTAGATAACGGCGGCGTAGATGAATCCAGCAGCCACAGAATAGCCACCTATTTGTTCCTTGCTCTTGCGATTCTAACAATTGCTTTCTTTGTTGTTTGTTGTCGCACCATCTACACCAGGTTCAGCTCAAGGAGGAGGGTGCCATCGAGGCACCAACCGGAGAGCAGAGGTGGTGGTGATTTTGTTGATGAAGAGCACGGAGCTATGGTGGACCACCCCATATGGTATATCCGCACCCTTGGCCTTCAGCAATCGATTATCAGTGCCATCACAGTTTGTAGGTATAAGAAAGGTGAGGGCTTGATCGAAGGAACCGAGTGTGCTGTTTGCTTGAGCGAGTTTGAAGAGGATGAGAATCTCAGACTTTTGCCTAAATGCTACCATGCTTTTCATTTACCTTGTATTGATACATGGCTTAGGTCTCATACCAATTGTCCCATATGCCGGGCCCCCATTGTTTCTGACCTTGCAACTGCTAGGTTGGACTCTACTTTTCTTGATTCAGAATCCTTTGGAGATAGCCATGTGGAAATTTTGGAAAATAGTGCTTCTGATTCTGAATTGGGGAACAGGGCAGAGGAAGAAGGCAGAGTGGAGGGTGAAGATGGAGTTAGGGTTTGTGAAACTGAAACCCCAGTTGAAGAGGTGCCCTACATTCTTCCTAGAAGATCTGTTTCTCTGGATTCCTTTTCTGTTGCAAATATCAACCGTGCTCTTGCCACAGTAGGATCTAATGGTAGCTCAAAAAGGGTGCTGGATGATGCTGGTTCTTCTTCAAAGGGGGGTTTTGGAAACGATTTGGCTACCACTTTCAAGGGTAGCTCTTCTTTCAGATTAACTAGGTATCTGCAGGGTGCTCCTAGTTCTTCAATGAAAAGGTCACAGTCCTACAATGGGAAGTACCTTCTGTCCTGGTACGGTCGCAATCAGAAGAAGCCAAATGGTTCTCTGAGAAGCTTTTAG 1161 0.472 MGLRHLTNLMTPLPQLCASLCHVKKSEACSPDCEICLRICLTNPQYPNYDSPPAAPPPPPQLPPFNLDNGGVDESSSHRIATYLFLALAILTIAFFVVCCRTIYTRFSSRRRVPSRHQPESRGGGDFVDEEHGAMVDHPIWYIRTLGLQQSIISAITVCRYKKGEGLIEGTECAVCLSEFEEDENLRLLPKCYHAFHLPCIDTWLRSHTNCPICRAPIVSDLATARLDSTFLDSESFGDSHVEILENSASDSELGNRAEEEGRVEGEDGVRVCETETPVEEVPYILPRRSVSLDSFSVANINRALATVGSNGSSKRVLDDAGSSSKGGFGNDLATTFKGSSSFRLTRYLQGAPSSSMKRSQSYNGKYLLSWYGRNQKKPNGSLRSF* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2111 386 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 377 IPR044675 -
Pvu6g2111 386 MobiDBLite consensus disorder prediction 50 65 - -
Pvu6g2111 386 CDD RING-H2_PA-TM-RING 172 215 - -
Pvu6g2111 386 Pfam Ring finger domain 172 215 IPR001841 -
Pvu6g2111 386 SMART ring_2 173 214 IPR001841 -
Pvu6g2111 386 SUPERFAMILY RING/U-box 167 222 - -
Pvu6g2111 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 222 IPR013083 -
Pvu6g2111 386 ProSiteProfiles Zinc finger RING-type profile. 173 215 IPR001841 -
Pvu6g2111 386 MobiDBLite consensus disorder prediction 50 69 - -
Pvu6g2111 386 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2111 Pvu-Chr6 30733587 30734747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2111 80 267 C3H Transcription Factor Family AT1G72220 47.644 1.24e-45 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2111 - - gmx:100804758 534.643