Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2110 ATGTCTCAGTCGGAGAGCAAGAAGAAGAAGGAGCGCGGCAGCGGCAAGGTGGTGGAAGAGGAACAAGCAGGCAAAGATGAGGGGTTGATGATAAAGCCTCAGAGCTTCACTCCCCCAATCGACACCTCCCAATGGCCCATTCTCCTCAAAAACTACGACCGCCTCAACGTCCGCACCGGCCACTACACCCCCATCCCCTCCGGCTACTCCCCCCTCAAACGCCCCCTCGCCGAATACCTCAAATACGGCGTCATCAACCTCGACAAGCCCGCCAACCCCTCCTCCCACGAGGTCGTCGCCTGGATCAAGCGCCTCCTCCGCGTCGAGAAGACTGGTCACTCCGGTACCCTCGATCCCAAGGTCACCGGCAATCTCATTGTCTGCATCGACCGCGCCACCCGCCTTGTCAAGTCCCAGCAGGGTGCCGGCAAGGAATACGTTTGCATCGCCCGCCTCCACTCTGCCGTGCCCGACGTCTCCAAGGTCGCACGCGCCCTGGAGACCCTCACCGGCGCCGTCTTTCAGCGCCCGCCCTTGATCTCCGCCGTCAAACGCCAGCTCCGCATTCGGACCATCTATGAAAGTAAGCTCCTTGAGTATGACCCTGATAGGCACTTGGTTGTTTTCTGGATTTCGTGTGAGGCTGGGACTTATGTTAGGACTATGTGTGTTCATTTGGGGTTGCTTCTTGGTGTGGGTAGCCATATGCAAGAGCTTAGGAGGGTTCGGTCTGGGATCATGGGGGAGAAGGATAACATGGTGAGCATGCATGATGTTATGGATGCTCAGTGGGTTTTTGATAATTTTAGGGATGAGAGTTATTTGAGAAGGGCTGTTATGCCCTTGGAGGTTCTTTTGACTAGCTATAAGAGGCTGGTTGTTAAGGACTCTGCTGTGAATGCTATTTGCTATGGTGCTAAGTTGATGATTCCTGGGTTGCTTAGGTTTGAGAATGATATTGATGTTGGGGAGGAGGTTGTGCTTATGACCACCAAGGGGGAGGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCCACTTGTGATCATGGGGTTGTGGCCAAGATCAAGAGGGTTGTCATGGATAGGGATACTTATCCAAGGAAATGGGGGTTGGGTCCTAGGGCTTCCATGAAAAAGAAGCTTATTTCTCAAGGGATGCTGGATAAGCATGGGAAGCCCAATGAGAAGACCCCCCAGGAGTGGCTTAGGAATCTTGTTTTGCCCACTGGTGGGGATAGTGTGATTGCTGGTATGGCTGCTGCGCCTGAACCTGAGGATGAGAAGGACGGAGATGGCGAAGGACGGAAGAGGAAGAAGCATGAGAGCACTGATAGCCCAGTTTCGGTCCCTGCTAAGAAGGCGAAAGTAGATGTAGAAGAGGTAGATGTCAAGAAGGTGGCTGATGAGACTGTGGAGGTTGAAGTTGACAAAAAAGAGAAGAAAAAGAAGAAGAAGAAGGACAAGGATAACAGTGAAGTTGCCTCTTCAGATGAGGAGAAAACTGAGAAGAAGAAGAAGCATAAGGATAAGGTTGAAGACGGTTCACCGGAGTTAGAAAAGTCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGAAGCTGCTGCTGCTGAAATTAGCAATGGAAAGGAAGATGAGAGTAATGCTGATAAGAGTGAAAAGAAGAAGCATAAGAAAAAGAAAAACAAAGATGCAGAGGAAGAATAG 1716 0.5082 MSQSESKKKKERGSGKVVEEEQAGKDEGLMIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLAEYLKYGVINLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVFDNFRDESYLRRAVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLISQGMLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGMAAAPEPEDEKDGDGEGRKRKKHESTDSPVSVPAKKAKVDVEEVDVKKVADETVEVEVDKKEKKKKKKKDKDNSEVASSDEEKTEKKKKHKDKVEDGSPELEKSEKKKKKKKDKEAAAAEISNGKEDESNADKSEKKKHKKKKNKDAEEE* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2110 571 MobiDBLite consensus disorder prediction 457 556 - -
Pvu6g2110 571 MobiDBLite consensus disorder prediction 419 571 - -
Pvu6g2110 571 MobiDBLite consensus disorder prediction 1 35 - -
Pvu6g2110 571 Gene3D Pseudouridine synthase 75 281 - -
Pvu6g2110 571 Gene3D PUA domain 42 373 IPR036974 GO:0003723
Pvu6g2110 571 TIGRFAM CBF5: putative rRNA pseudouridine synthase 49 374 IPR004802 GO:0006396
Pvu6g2110 571 SMART DKCLD_2 41 99 IPR012960 -
Pvu6g2110 571 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 21 570 - -
Pvu6g2110 571 Pfam PUA domain 290 362 IPR002478 GO:0003723
Pvu6g2110 571 MobiDBLite consensus disorder prediction 426 450 - -
Pvu6g2110 571 Pfam tRNA pseudouridylate synthase B C-terminal domain 220 286 IPR032819 -
Pvu6g2110 571 Pfam TruB family pseudouridylate synthase (N terminal domain) 103 219 IPR002501 GO:0006396
Pvu6g2110 571 SMART pua_5 290 364 IPR002478 GO:0003723
Pvu6g2110 571 Pfam DKCLD (NUC011) domain 42 99 IPR012960 -
Pvu6g2110 571 ProSiteProfiles PUA domain profile. 289 364 - -
Pvu6g2110 571 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 21 570 IPR004802 GO:0006396
Pvu6g2110 571 SUPERFAMILY PUA domain-like 289 370 IPR015947 -
Pvu6g2110 571 TIGRFAM unchar_dom_2: uncharacterized domain 2 285 361 IPR004521 GO:0003723
Pvu6g2110 571 SUPERFAMILY Pseudouridine synthase 42 287 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu6g2110 571 MobiDBLite consensus disorder prediction 1 27 - -
Pvu6g2110 571 Coils Coil 551 571 - -
Pvu6g2110 571 CDD PseudoU_synth_hDyskerin 81 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2110 Pvu-Chr6 30729257 30731332 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2110 4 459 NAC Transcription Factor Family AT3G57150 83.660 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2110 K11131 - gmx:100806355 842.417