Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2095 ATGATTATGGCGAGAAGGAAGATAGCGATGAAGAAGATCGAGAACATAAACGCGAGGCAAGTGACATTTTCGAAGAGGAGAAAAGGTCTCTTCAAGAAGGCTCAGGAACTGTCAACTCTTTGTGACGCTCAGATTGCTCTCATAGTCATTTCCGCCACCAGCAAGCTCTTCGAGTACGCCACTTCAAGCATGCAACAAATATTTGAAAGGCGAAATCGGCATTCTGGTGTTCAAGGATCAGACATTTCATCTACTGCACAACAGCTTGGAAGTGAGTCTTTTGACATGCTGCACAAGGAAATAGTAGATAAGACTCATGAACTGAGTCGGTTGAATGGGAAAGAGTTGCAAGGATTGACAATACAAGAACTGCACAAACTGGAGGAACTTCTCCTCAGACGTTGGACCACTATTTCAAAAATTAAGGATGAAAAAATTACACAAGAGATCAACAGCCTTAAAACTAAGGAAGCCGAACTTACAGAAGAGAACCAGAAATTGAAGCAGAAGTTGGTTCCAGAACAAAGGCAATGTTATGAGTCAATTACCAGCAGTTCATCTGATTTTCCTCCAGACAATGGCCCTTCTGACACATCTCTCAATTTGGGGCTGCGTTTATTTGAATGA 627 0.4211 MIMARRKIAMKKIENINARQVTFSKRRKGLFKKAQELSTLCDAQIALIVISATSKLFEYATSSMQQIFERRNRHSGVQGSDISSTAQQLGSESFDMLHKEIVDKTHELSRLNGKELQGLTIQELHKLEELLLRRWTTISKIKDEKITQEINSLKTKEAELTEENQKLKQKLVPEQRQCYESITSSSSDFPPDNGPSDTSLNLGLRLFE* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2095 208 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu6g2095 208 PANTHER - 2 175 - -
Pvu6g2095 208 MobiDBLite consensus disorder prediction 179 202 - -
Pvu6g2095 208 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Pvu6g2095 208 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Pvu6g2095 208 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Pvu6g2095 208 SMART madsneu2 3 62 IPR002100 GO:0003677|GO:0046983
Pvu6g2095 208 Gene3D - 15 84 IPR036879 GO:0003677|GO:0046983
Pvu6g2095 208 MobiDBLite consensus disorder prediction 179 200 - -
Pvu6g2095 208 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Pvu6g2095 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 175 - -
Pvu6g2095 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 59 IPR002100 GO:0003677|GO:0046983
Pvu6g2095 208 Coils Coil 143 170 - -
Pvu6g2095 208 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu6g2095 208 CDD MADS_MEF2_like 4 80 IPR033896 GO:0000977|GO:0045944
Pvu6g2095 208 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Pvu6g2095 208 ProSitePatterns MADS-box domain signature. 5 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2095 Pvu-Chr6 30647668 30653064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2095 3 204 MADS-box Gene Family AT2G22540 43.220 5.66e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu6g2095 K-box 3.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2095 - - vun:114187603 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2184 2 37451699 37453782 Pvu6g2095 6 30647668 30653064 PCT