Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2094 ATGGTGAGGAAGAAGATACCGATCAAGAAGATCGTGAACGTGACTGCGAGGCAGGTCACATTTTCAAAGAGGAAGAGTGGGCTTTTGAAGAAGGCACGTGAGCTTTCTCTTCTCTGTGATGCTGAGATTGCTCTCATGGTCTTTTCACCTGGTGGCAAACTCTTCGACTATGCAAGTTCAAGTATGCAGAAAATAACAGAAAGACATATTTTACGGTCAGAGTTTAACCAAGACAAACTAGACCAGTTACCTCCCACGGAACAGATTAGAAGCAGTCATGCTTATTTGAAGAAGGAATTGGAAGACAGAAGTCGTGAAATGAGACAACTGAATGGAGAAGAACTGCAAGGATTGAGCTTCAAGGAACTACAGAAATTAGAAGGACGACTTGAGTCATCCTTGAACTGTGTTTATAAAGCCAAGGTTCAAAACTTTATAAGAGATATCAATATCCTTACTCAAAAGCAAAACAAACTCATGGAAGATAACCGACTGCTAAAACAGAGGATAAGTTCTAGGAATGAAATTTGTTCAGTCCAGAGACATGAGCATGAACAAGAGCAATCCTTTGACACCTCCCTCACATTGGGGCTACCTTTTCCTTCTGACTCAAAATAG 618 0.4094 MVRKKIPIKKIVNVTARQVTFSKRKSGLLKKARELSLLCDAEIALMVFSPGGKLFDYASSSMQKITERHILRSEFNQDKLDQLPPTEQIRSSHAYLKKELEDRSREMRQLNGEELQGLSFKELQKLEGRLESSLNCVYKAKVQNFIRDINILTQKQNKLMEDNRLLKQRISSRNEICSVQRHEHEQEQSFDTSLTLGLPFPSDSK* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2094 205 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu6g2094 205 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 181 - -
Pvu6g2094 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu6g2094 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu6g2094 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu6g2094 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu6g2094 205 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu6g2094 205 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu6g2094 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 - -
Pvu6g2094 205 MobiDBLite consensus disorder prediction 190 205 - -
Pvu6g2094 205 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Pvu6g2094 205 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Pvu6g2094 205 MobiDBLite consensus disorder prediction 181 205 - -
Pvu6g2094 205 Coils Coil 149 169 - -
Pvu6g2094 205 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Pvu6g2094 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu6g2094 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2094 Pvu-Chr6 30637568 30644312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2094 1 200 MADS-box Gene Family AT2G22540 43.154 3.57e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu6g2094 K-box 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2094 - - gmx:100779995 312.768