Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2077 ATGGGGAATGGAGGTTTTAGCACACTAAGTCTTGTGTTGTGCTATGCAATGCTAACAGTTTCATTCCTTCCTCCTACAAATCCACTAACGTTCAGCTACTCCCACTTTTGGGAAGATGATGCAAGGCTGCAACTGCAAGGAGACGCAGAAGTTTCACGTTCAGAAATCCAAGTCACATATAACGGGGAAGGCCAAAGCAACAGTTACAGTGTTGGACGTGTCACACCTCTTGAAAACATGCAGCTATGGGATATGAGTTCTGGGAAACTCGCAGACTTCACTACTCAATTTAACTTCTCTGTTTATTCAGATGAAGCTCTGTATGGAGATGGGTTGGCATTCTTCTTGGCGGATCCTGAGCTTCCCCTTTTGAATAACATCACAGAAGGGGGTGGTCTTGGCCTTGTGGATGGTGGCCAAGTGTTGAACTCAACTCACCACTCATTTGTGGCACTGGAGTTTGACACCTTCCAAAATCCATGGGACCCTGAAGACCCTCATGTGGGTATGAATTTCAACTCTATGGAGTCCAACATAACTGTGCCATGGCTAGCTGATATGTCAACTAATGATTCTTACAGTTGTAGCATTGAGTACAATTCCACCACTCTTAGTTTAAGTGTTTCTTTCAGTGGCTACAATTACCAAAAAGGTGGTCGAGTAGAAAATAGCTTTTCATACCAAGTTGATTTGAGAAAGCACTTACCAGAGAGGGTTATGGTTGGGTTCTCAGCAGCTACGGGAGACTTGTTTGAGAACCATATTCTGAAGTCATGGTCTTTTAGTTCAACCTTACAAATTAGTCATAGTTCTGATGGTAATAACAAAGTAGTTGAGTGGCTAGGAATTGGGATGGGTTTGGTGGTTTTGTTAGGATTGTTAGGATTGTCCTGTTTTCTGATCTGGAGAAGGATCAAAGGAAAGGGAGAAATCTTGGAACTTGATCTACAAATGGATGATGAATTCCAAAAGGGAATAGGACCCAAGAGGTTTCGCTACAATGAACTTGAAAGTGCAACAAATAAATTTTCAGAGTCAGAGAAGCTGGGACAAGGTGGCTTCGGCAGCGTCTATAGGGGTTTTCTGAAGGATCTAAACTCCTATGTTGCTATCAAGAGGGTATCAAGAGAGTCTAAGCAGGGGGTAAAGGAATATGCTACTGAAGTTAAGATCATTAGCCAGTTGAGGCACAAGAATCTGGTGCAACTCCTTGGTTGGTGCCACAGAGAAAAAGATCTCCTTCTTGTGTATGAATTCATGCCAAATGGAAGCTTGGATTTCCATTTATATGGGAAGGGGTTCTTGACATGGCCAATAAGGTATAACATAGCTCTAGGCCTGGCTTCAGCATTGCTATACCTGCAAGAAGAGTGGGAAAAATGTGTTCTTCACAGGGACATAAAATCAAGCAACATAATGTTGGATTCAAGTTTCAATGCTAAGCTTGGTGACTTTGGTTTGGCTAGGTTGGTGGATCATGAGAAAGGGTCACAAACAACATTTATAGCTGGGACAAGAGGGTACATTGCACCAGAATATGTGACTACAGGGAAAGCTTATAAGGAATCTGACATATACAGTTTTGGGGTAGTTTTGTTGGAGATAGCAAGTGGAAGAAAGCCCATAGACCTAAGTGCCAAGGAGGGGAAGGTAACAGTGGTAGAGTGGGCTTGGGAGTTGTATGAATTGGGAGAGATAGTTGAAGTAGCAGACCCAAAACTGTGTGGAGAATTTGATGAGGAGGAAATGGAAAGGTTGGTGGCTATAGGGCTTTGGTGTGCTCATCCAAACTACAGATTCAGGCCTTCTGTGATGCAAGTTATCCAAATGCTTAAATTTGAAGCTGAATTGCCAACTCTCCCAAAGTTCTTGCCACTCCAAAACTTCTATCCTTTAACAGTAAAAGCAATTTTTTCATCTCCTTCAAACACTCTGTTTAAGGAGGATTTTTTGTAG 1956 0.4238 MGNGGFSTLSLVLCYAMLTVSFLPPTNPLTFSYSHFWEDDARLQLQGDAEVSRSEIQVTYNGEGQSNSYSVGRVTPLENMQLWDMSSGKLADFTTQFNFSVYSDEALYGDGLAFFLADPELPLLNNITEGGGLGLVDGGQVLNSTHHSFVALEFDTFQNPWDPEDPHVGMNFNSMESNITVPWLADMSTNDSYSCSIEYNSTTLSLSVSFSGYNYQKGGRVENSFSYQVDLRKHLPERVMVGFSAATGDLFENHILKSWSFSSTLQISHSSDGNNKVVEWLGIGMGLVVLLGLLGLSCFLIWRRIKGKGEILELDLQMDDEFQKGIGPKRFRYNELESATNKFSESEKLGQGGFGSVYRGFLKDLNSYVAIKRVSRESKQGVKEYATEVKIISQLRHKNLVQLLGWCHREKDLLLVYEFMPNGSLDFHLYGKGFLTWPIRYNIALGLASALLYLQEEWEKCVLHRDIKSSNIMLDSSFNAKLGDFGLARLVDHEKGSQTTFIAGTRGYIAPEYVTTGKAYKESDIYSFGVVLLEIASGRKPIDLSAKEGKVTVVEWAWELYELGEIVEVADPKLCGEFDEEEMERLVAIGLWCAHPNYRFRPSVMQVIQMLKFEAELPTLPKFLPLQNFYPLTVKAIFSSPSNTLFKEDFL* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2077 651 PANTHER L-TYPE LECTIN-DOMAIN RECEPTOR KINASE 39 645 - -
Pvu6g2077 651 SMART serkin_6 343 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2077 651 ProSiteProfiles Protein kinase domain profile. 343 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2077 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Pvu6g2077 651 Pfam Legume lectin domain 29 273 IPR001220 GO:0030246
Pvu6g2077 651 Gene3D Transferase(Phosphotransferase) domain 1 420 630 - -
Pvu6g2077 651 CDD lectin_legume_LecRK_Arcelin_ConA 29 265 IPR001220 GO:0030246
Pvu6g2077 651 Gene3D - 27 279 - -
Pvu6g2077 651 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524
Pvu6g2077 651 SUPERFAMILY Protein kinase-like (PK-like) 327 628 IPR011009 -
Pvu6g2077 651 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
Pvu6g2077 651 ProSitePatterns Legume lectins alpha-chain signature. 235 244 IPR000985 -
Pvu6g2077 651 CDD STKc_IRAK 349 612 - -
Pvu6g2077 651 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 269 IPR013320 -
Pvu6g2077 651 Pfam Protein kinase domain 344 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2077 651 PANTHER - 39 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2077 Pvu-Chr6 30521384 30523445 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2077 12 630 Receptor kinase-like Gene Family AT5G10530 45.741 5.94e-176 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Pvu6g2077 Pkinase 8.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2077 - - gmx:100780181 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2214 2 37730542 37732533 Pvu6g2077 6 30521384 30523445 PCT
Pvu6g2077 6 30521384 30523445 Pvu2g2215 2 37741409 37743415 PCT