Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2076 ATGGGTAGAGGGAAGATTGCGATTCGAAGGATCGACAACTCCACTAGCCGTCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTAGAGAATTATCAATTCTCTGTGATGCTGAAGTTGGATTGATGGTGTTCTCCAGCACTGGGAAGCTTTATGACTATGCAAGCACAAGGACATGGTTGCAGTTGTTCTGGAAGAAGACAGGGCTTGAACCTTTAAGTTCCCACTCTCTCTTTTAG 249 0.4378 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTRTWLQLFWKKTGLEPLSSHSLF* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2076 82 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 61 - -
Pvu6g2076 82 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu6g2076 82 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
Pvu6g2076 82 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu6g2076 82 Gene3D - 13 72 IPR036879 GO:0003677|GO:0046983
Pvu6g2076 82 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu6g2076 82 CDD MADS_MEF2_like 2 62 IPR033896 GO:0000977|GO:0045944
Pvu6g2076 82 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu6g2076 82 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu6g2076 82 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu6g2076 82 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 61 - -
Pvu6g2076 82 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2076 Pvu-Chr6 30509865 30511901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2076 1 60 MADS-box Gene Family AT2G14210 88.333 6.75e-34 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu6g2076 SRF-TF 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2076 K09264 - gmx:100808145 118.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g2076 6 30509865 30511901 Pvu6g2076 6 30509865 30511901 ECH
Pvu2g2216 2 37756299 37758495 Pvu6g2076 6 30509865 30511901 PCT