Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2056 ATGAGGAGTTTTAATATGGAGATTTCATCAATCAGAGGGTTACCTCAACTGGGGATAATGGAGGATCCTAACTTTCTTCATCAGTGGCAGTTAAACCCTGCTGATACAACTAGCTTAACAGGTGCTGCTTTTGGTGAGAGTTTGCAAAAGCTCTCATTCTCTGGTAACTCAAACTTCAACCTCAAAACAACCATGGAAACATCACCAAATGGAAATGAAAGACCAACAAAACAGCTCAGAAACAACAGCTGGAATAGCAACAAAAGTCAACAACAGACACCAGACACACAATATGCTTCATGCTCAAATCTTCTTTCATTTGTTAATTCGAATTACTCAAATGAATTGGGACTAGGGAAACCTAAGGTGGAGATGGTGTGTCCTGAAATTGATAACAGTAATCTTGCAGAGATGTTGATCTCTCAAGGAACCTTGGGGAATCAAAACTACCACTTCAAGGCCAGCCAAGAGGCCAAAAAGATTGAAACACGTCCCAAACTTTCTCAACCTCAGGACCACATAATTGCTGAAAGGAAGCGGAGAGAGAAGCTCAACCAACGGTTCATTGCTCTATCTGCTCTCGTTCCTGGTCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAATCAATCAAGTACATGAAACAATTGCAAGAGAAAGTGAGTACTCTTGAGGAGGAACAGAACAGAAAGAGAACTGTGGAATCTGTGGTAACTGTGAAGAAATATCAGCTATCGAGTGATGCTGAAGACTCTTCCAGTTCAGAAACTGGTGGTACATTGGACGAGGTACTACCTGAAATTGAAGCAAGAATTTGTGAAAGAAATGTTCTCATAAGAATACACTGTGAGAAGAATAAAGGAATCATAGAGAAAACGATCAGCGAAATTGAGAAACTCCATTTGAAAGTTACCAATAGCAGTGCGTTGTCATTTGGGAGTTTCATTCTTGATATAACCATTATTGCTCAGATGGATATGGAATTTTGCATGACAGTGAAGGATCTCGTGAGAAGTTTACGCTCAGCTTTTTCATATTAG 1041 0.3996 MRSFNMEISSIRGLPQLGIMEDPNFLHQWQLNPADTTSLTGAAFGESLQKLSFSGNSNFNLKTTMETSPNGNERPTKQLRNNSWNSNKSQQQTPDTQYASCSNLLSFVNSNYSNELGLGKPKVEMVCPEIDNSNLAEMLISQGTLGNQNYHFKASQEAKKIETRPKLSQPQDHIIAERKRREKLNQRFIALSALVPGLKKMDKASVLGESIKYMKQLQEKVSTLEEEQNRKRTVESVVTVKKYQLSSDAEDSSSSETGGTLDEVLPEIEARICERNVLIRIHCEKNKGIIEKTISEIEKLHLKVTNSSALSFGSFILDITIIAQMDMEFCMTVKDLVRSLRSAFSY* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2056 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Pvu6g2056 346 CDD bHLH_AtNAI1_like 171 242 - -
Pvu6g2056 346 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983
Pvu6g2056 346 SMART finulus 174 223 IPR011598 GO:0046983
Pvu6g2056 346 Coils Coil 207 234 - -
Pvu6g2056 346 MobiDBLite consensus disorder prediction 59 96 - -
Pvu6g2056 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 233 IPR036638 GO:0046983
Pvu6g2056 346 PANTHER BHLH TRANSCRIPTION FACTOR 7 345 - -
Pvu6g2056 346 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 7 345 - -
Pvu6g2056 346 Gene3D - 167 242 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2056 Pvu-Chr6 30360507 30363312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2056 168 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 60.221 2.56e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu6g2056 HLH 5.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2056 - - gmx:100798018 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g2056 6 30360507 30363312 Pvu6g2056 6 30360507 30363312 ECH
Pvu2g2229 2 37921702 37923239 Pvu6g2056 6 30360507 30363312 PCT