Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2038 ATGAGTAACAGTGAGTGGGTGTTGGATTATGAGTATCTAGACAACATTTCCCTCCCAACTCTTCACCCACCCAATTTCTCTTGGTCTTCTTCCTCTCCTCCTCCCATCTTCAGTGTGGAGGAAGATGACCCGTTGGGACTTTCGGATGGTTTCAAGGAAAACGGGTCAAAAAAACGTTTGAGGTCACCTTGTTCCAAAGCATGTAAAGAGAAAATGAGAAGGGATAGACTCAATGACAGGTTTTTGGAACTGGGATCTATCCTAGACCCTGGAAGGCCTCTAAAAATGGACAAGGCTGTTATATTAAGTGATGCAGTTCGATTGGTGTCTCAGTTACGAGAGGAAGCTCATAAGCTACGAGAGTCCATTGAGAATCTACAAGGGAAAATCAATGAATTGAAGGCTGAGAAGAATGAGCTTCGTGAGGAGAAGCAGCGACTAAAAGCAGAGAAAGATAGCCTTGAACAGAAGATTGAGGCCTTCAGTTCACAATCTAGCTTTCTTCGTGCATTTCCAGGACCAGGACAAGTTGTTGGTAGCAAGTTGGTGCCCTTCATGGGCTATCCAGGAGTTGGCATGTGGCAGTTTTTACCACCTGCTGCTGTTGACACCTCACAGGACCATGTACTCAGGCCACCAGTTGCATAA 648 0.4552 MSNSEWVLDYEYLDNISLPTLHPPNFSWSSSSPPPIFSVEEDDPLGLSDGFKENGSKKRLRSPCSKACKEKMRRDRLNDRFLELGSILDPGRPLKMDKAVILSDAVRLVSQLREEAHKLRESIENLQGKINELKAEKNELREEKQRLKAEKDSLEQKIEAFSSQSSFLRAFPGPGQVVGSKLVPFMGYPGVGMWQFLPPAAVDTSQDHVLRPPVA* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2038 215 Pfam Helix-loop-helix DNA-binding domain 66 112 IPR011598 GO:0046983
Pvu6g2038 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 132 IPR036638 GO:0046983
Pvu6g2038 215 CDD bHLH_AtILR3_like 66 141 - -
Pvu6g2038 215 Coils Coil 102 164 - -
Pvu6g2038 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Pvu6g2038 215 Gene3D arf6 gtpase in complex with a specific effector, jip4 111 165 - -
Pvu6g2038 215 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 3 215 - -
Pvu6g2038 215 SMART finulus 67 118 IPR011598 GO:0046983
Pvu6g2038 215 Gene3D - 52 110 IPR036638 GO:0046983
Pvu6g2038 215 PANTHER BHLH TRANSCRIPTION FACTOR 3 215 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2038 Pvu-Chr6 30242102 30245399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2038 3 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 54.077 1.19e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu6g2038 HLH 2.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2038 - - gmx:100790993 327.02