Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2032 ATGTTTGAGGCTTGGATTTCTCTCAAGAAGGCCCTTCAGTGCAAACCACATCCAAATCATGTTCACGATCCAGAGACTATTAGGCAACAAAGAGGTAATCAGAGAAAAAAGTTAGGCACTGTTGAGAGTTCAAATGCCAAAGATTTCATCCAAGGAAGCAAGAGGCACTCTAAAAATCCCCTAAGTTTCAAAGGGGACATTGACATCACTGCTCCCATAATCGACCAGATTAATCTTGATAGCTCAAACCATGAAACTAGTCGACGTTTTCCTTGTCCTCAAAGCCATATCAGCAATAAAGCTTCTCGTAGAACACAAAGGTCAGCTACATCTTCAAGGATAGCATACCCTCTTGATCACAATGAAGCAAATGGCTCCTCCAATACAGGAACGTTGGTTCAGATGGATTCTGACGGTTGTTCATCATTAACATGTCATAAATGTGGCCAGAAATTAAAAAATCTTGTTGCTTTAGAAGCACACCATATCTCCGACCACTCAGTGATTGAACTTGAGGAAGATTCGTCGAGACAGATCATAGAAACAATATGTGGAACAAGGTCGGTTTATTCTGAAAGCATGTTGGGTGAGATTGGCTGCATCTTAAAGGTTCTGAACATGCCAAAAACCTTTGCTTGCTTTGAGGAGTACAGAGAAAAGGTGAAGGAAAAGGCTGAGAAACTAAAGAAGAAGCACCCTCGTTGTGTGGCTGATGGAAACGAACTTTTAAGGTTCCATGGCACAACCATTGCATGTTCTCTGGGCATAAACAGTTCTTATACGCTTTGCACTTTAGAGTATTGTGGTATATGTCAAATTCTGAGACATGGGTTTTCGAGCAACAAGGAATTCAAAGGTGCATTGGGGGTTTACACCACTTCCACAAGTGGGAAAGCCTTTGAATCCATTTCCATTATGACATCCCATGAGAGACCATTTTCAAGAAAGTCCATCATAGTTTGCAGAGTAATAGCTGGGAGAATTTATAGCCCTCTTGAAGGAGTTGAAGAAAGGTGTGATTCAGAGTTTGATTCATTGGCAGAAAAAATAAATGATGTTGAGGAACTTTACGTCTTAAATCCCAGAGCCCTTCTCCCTTGCTTCGTGGTAATCTACAAACAGCAACCACCCAAGTTTAGAAGGGTCATTCCAAGCTTAAGGATAAGTAGCTTTTAA 1176 0.4099 MFEAWISLKKALQCKPHPNHVHDPETIRQQRGNQRKKLGTVESSNAKDFIQGSKRHSKNPLSFKGDIDITAPIIDQINLDSSNHETSRRFPCPQSHISNKASRRTQRSATSSRIAYPLDHNEANGSSNTGTLVQMDSDGCSSLTCHKCGQKLKNLVALEAHHISDHSVIELEEDSSRQIIETICGTRSVYSESMLGEIGCILKVLNMPKTFACFEEYREKVKEKAEKLKKKHPRCVADGNELLRFHGTTIACSLGINSSYTLCTLEYCGICQILRHGFSSNKEFKGALGVYTTSTSGKAFESISIMTSHERPFSRKSIIVCRVIAGRIYSPLEGVEERCDSEFDSLAEKINDVEELYVLNPRALLPCFVVIYKQQPPKFRRVIPSLRISSF* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2032 391 Gene3D - 166 376 - -
Pvu6g2032 391 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 374 - -
Pvu6g2032 391 MobiDBLite consensus disorder prediction 30 57 - -
Pvu6g2032 391 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 374 - -
Pvu6g2032 391 ProSitePatterns Zinc finger C2H2 type domain signature. 145 166 IPR013087 -
Pvu6g2032 391 MobiDBLite consensus disorder prediction 33 48 - -
Pvu6g2032 391 MobiDBLite consensus disorder prediction 82 111 - -
Pvu6g2032 391 Coils Coil 211 231 - -
Pvu6g2032 391 SUPERFAMILY ADP-ribosylation 225 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2032 Pvu-Chr6 30216413 30217962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2032 4 373 C2H2 Transcription Factor Family AT5G54630 40.564 1.14e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu6g2032 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2032 - - gmx:100792577 566.614