Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2027 ATGGAGTATGAAGATGAGGACTGGTTATGTGTTACTATGGAAGAGTTTTCTCTTGCTACTGAAAATGGTTGTACCAAGCAAGGGATAGGTAGGAAGAGGAACTATGATGATGACACAAGAGAGTTCAAATCAAAGAACCTTGAGACTGAAAGGAGGAGGAGGGAGAAGCTCAGTAGCAGGCTCTTGATGCTGCGTGCTATAGTGCCTATCATCACAAATATGAACAAAGCCACAATCATTGAAGATGCTATCACGTACATTGAGAAGCTTCAAGACAAAGTCCAGAGTCTCAGCCAAGAGCTTCACCAGATGGAAGCAACTTCAGAGGAAACAGCAGAGGCAAAAATAGATGAAATTGATGCTGCACAAGATATGAAGAATTTGGGGATACAGGAAGAGGTTAGAGTGGCACAAATAGATGGGAATAAACTCTGGGTTAAGATCATCATTGAGAAGAAGAGAGGAAGATTCAGAAAATTGATGGAAGCTCTCAATAATTTCAGCATTGAACTCATAGACACCAATCTCACAACCACAAAAGGAGCATTTCTTATTACAAGCTGTATACAGGACAGAGATGGTGAAAAACTTGAAATTCAGCAAACCAAGGATTTGTTGCAGGATATTATCAATGGCATGTAG 642 0.4034 MEYEDEDWLCVTMEEFSLATENGCTKQGIGRKRNYDDDTREFKSKNLETERRRREKLSSRLLMLRAIVPIITNMNKATIIEDAITYIEKLQDKVQSLSQELHQMEATSEETAEAKIDEIDAAQDMKNLGIQEEVRVAQIDGNKLWVKIIIEKKRGRFRKLMEALNNFSIELIDTNLTTTKGAFLITSCIQDRDGEKLEIQQTKDLLQDIINGM* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2027 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 90 IPR011598 GO:0046983
Pvu6g2027 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 107 IPR036638 GO:0046983
Pvu6g2027 213 PANTHER TRANSCRIPTION FACTOR DYT1 9 212 - -
Pvu6g2027 213 Pfam Helix-loop-helix DNA-binding domain 45 91 IPR011598 GO:0046983
Pvu6g2027 213 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 9 212 - -
Pvu6g2027 213 SMART finulus 47 96 IPR011598 GO:0046983
Pvu6g2027 213 Coils Coil 80 114 - -
Pvu6g2027 213 Gene3D - 33 107 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2027 Pvu-Chr6 30189703 30190749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2027 42 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 46.328 2.06e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu6g2027 HLH 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2027 - - vun:114186874 347.436