Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2026 ATGGAGCATGAAGATGAAGACTGGTTGTGTGTTACTATAGAAGAAAATGATTGTAGCACACAAAGGATGAGTAGGAAGAGGAACTATGATGATAACACAAGAGAGTTCAAATCAAAAAACCTTGAGGTTGAAAGGAGGAGGAGGGAGAAGCTCAGTAGGAGGCTTTTGATGCTGCGGTCTATAAACCCTTTCATCACAAATATGAATAGAGGAACAATTATTGTAGATGCTATCACCTACATAGAGAAGCTGCAAGACGAAGTCCAGAGTCTCAGCCAACAACTTCACCAAATGGAAGCAACTTCAGAGGAAACAGCTGAGACAAAAATAGATGAAATTGAAGCTGTGGAAGATATGAAGAATTGGGGGATACAGGCAGAGGTCATTGTGGCACAAATAGATGAGAATAAGCTCTGGGTCAAGATCATAATTGAAAAAAAGAGGGGAAGTTTCAGCAAATTGATGGAGACACTCAATTACTTCGGCATTGAGCTCATAGACACTAATCTCACAACCACAAAAGGAGCATTTCTGATTACAAGCTGCATTCAGGTCAAAGATGGAGAAAGACTTCAAATTAATCAAATCAAGAATTTGTTGCAAGATATTATCAATGACATGTAA 624 0.3878 MEHEDEDWLCVTIEENDCSTQRMSRKRNYDDNTREFKSKNLEVERRRREKLSRRLLMLRSINPFITNMNRGTIIVDAITYIEKLQDEVQSLSQQLHQMEATSEETAETKIDEIEAVEDMKNWGIQAEVIVAQIDENKLWVKIIIEKKRGSFSKLMETLNYFGIELIDTNLTTTKGAFLITSCIQVKDGERLQINQIKNLLQDIINDM* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2026 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 84 IPR011598 GO:0046983
Pvu6g2026 207 PANTHER TRANSCRIPTION FACTOR DYT1 14 206 - -
Pvu6g2026 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 33 100 IPR036638 GO:0046983
Pvu6g2026 207 SMART finulus 41 90 IPR011598 GO:0046983
Pvu6g2026 207 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 14 206 - -
Pvu6g2026 207 Pfam Helix-loop-helix DNA-binding domain 39 85 IPR011598 GO:0046983
Pvu6g2026 207 Gene3D - 24 101 IPR036638 GO:0046983
Pvu6g2026 207 Coils Coil 74 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2026 Pvu-Chr6 30187428 30188553 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2026 22 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 42.784 5.17e-45 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2026 - - gmx:100793637 317.005