Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2022 ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTAATCCAACAAGAAGTGTGTTCCCTCTCATGTCATCAACTTGTTCCGTGGCAGCAGCTGATGCAGGAAACTACAGCACCTGGCAAAGCACTGAGGACATTAATAACTTCATTTCTTCTGATAATTCTCTGAGTTTTCTTGATGTTGAGAAGCCCCAGCAGAGGGACTCAGCTAGTGGAACTGGTAGCATCCTCATCGATTCCACCTTACAAATGATGGGTTTTGGCATGTCATCTTCAACTTCATCCAATTGGAATCAATCTTTATTAGGGAGCGATTTTCATTCTGTGCTTCAAGAAGAAACAGGCATGGGTGGTGGTTCTTCCCATGATTCACAAATCCAAAAGGATTGGAGTCCAAAGAATTTCTCATCTGCTGCTGGCCAAGATTCCACCGTTGATGCTTTCAAGTCAATGAACCAAGAATTTTCATTGGATCAGCAAAGTCTGAGTTCTGTTGTTACAAGTACCGGATCATTATCTGATGGTTTTCCAGTTGTTTCAGCCTCCTATGGTTACCCTTCAACCTTGATACAAAGCTTATATGAGCCTGAGGCTCAACCACAGCCACAGAACTCACTTTTCACCAACCCCACCATGTCCTATTCTTCATCTACCGCAAACTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAATCTCTTCTCTTCTCAAGCCCTCAACGCCAAAACAGCAGCTTAGTGGATTGCACTTTTCCGACACCACTTCTTTCTGGAATGGTTCAGCCGAAGCACTTCATGACATAAGAGCAGGTGTTTTTGCTTCATCACAGCCGCAGTATCAAACGCCAAAATTTGAAGACAAATCCAACACTCCCAATACTCTATTAAACAAGCTCAAGAGAGAAGAATCTCCAGACGCAGCATCATCCGCGAAGAAAAATTCTTCTGAGCCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTTAGGAAGGAAAAGCTAGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTGTTAAGCACTCCATATATTAAAAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGAGTCAGAAGGGCGAAAAGAAGATCTGAGAAGCCGAGGGCTGTGTTTGGTGCCGATTTCAAGCACGTTCCCGGTGGCTAACGAGAGCAGTGTTGATTTCTGGACGCCAACATTCGGAGGTGCAGTGATTGGAAGGTAG 1356 0.444 MAEEFQAAICGESWWNINPTRSVFPLMSSTCSVAAADAGNYSTWQSTEDINNFISSDNSLSFLDVEKPQQRDSASGTGSILIDSTLQMMGFGMSSSTSSNWNQSLLGSDFHSVLQEETGMGGGSSHDSQIQKDWSPKNFSSAAGQDSTVDAFKSMNQEFSLDQQSLSSVVTSTGSLSDGFPVVSASYGYPSTLIQSLYEPEAQPQPQNSLFTNPTMSYSSSTANYGTCSNELSPTWSKISSLLKPSTPKQQLSGLHFSDTTSFWNGSAEALHDIRAGVFASSQPQYQTPKFEDKSNTPNTLLNKLKREESPDAASSAKKNSSEPAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVLSTPYIKNGAPIQHQQDCDNLKESEGRKEDLRSRGLCLVPISSTFPVANESSVDFWTPTFGGAVIGR* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2022 451 MobiDBLite consensus disorder prediction 118 145 - -
Pvu6g2022 451 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 386 IPR036638 GO:0046983
Pvu6g2022 451 MobiDBLite consensus disorder prediction 304 329 - -
Pvu6g2022 451 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 56 439 - -
Pvu6g2022 451 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
Pvu6g2022 451 CDD bHLH_AtbHLH_like 337 384 IPR045239 -
Pvu6g2022 451 Gene3D - 341 392 IPR036638 GO:0046983
Pvu6g2022 451 PANTHER TRANSCRIPTION FACTOR BHLH123 56 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2022 Pvu-Chr6 30161117 30164332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2022 1 446 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 37.716 2.03e-66 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2022 - - gmx:100794682 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2259 2 38293728 38295668 Pvu6g2022 6 30161117 30164332 PCT