Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2017 ATGCCAGGTTTCTTTTTCTTTCTCTTTTGCTTCTTGGCATTACACATCACTATTTCATTCTCCTCAGACACCTTAACCCCAACACAAACTCTTCTAACCAACCAAACCCTGGTTTCACCTACCCAAGTCTTTGCTCTGGGCTTCTTTTCCAGGACCAATTCCTCTTGGTACTTAGGCATATGGTACCACAACATCAGCAACGGACCCGTAGTATGGGTGGCCAACAGAGACAACCCTCTCCACAACTCCACAGGATTTCTAACCATCGGAGAAAACAAAAACATGATTCTAACAACTCCATCAGGGGAACCCGTTTGGTCCTCCAATGTCACCAAAGCCAACAACCCCATTCTCCAGCTTTTGGACACGGGAAATCTAGTTCTCAGAGAAGCAAACGTAACCGACCCCGCAAACTATCTCTGGCAAAGCTTCGATTACCCAACAGACACACTCTTACCTGGGATGAAAATGGGGTGGAACCTAGACACTGGCGTGGAGAAACACTTAACCTCGTGGAAAGTAGAAGGAAAAGACCCTTCAAGTGGTGATTACTCTTTCAAGATAGATCCTCGTGGAATACCAGAAATTTTCTTGATGAATGAAAATGATAGAATATATAGAAGTGGGCCTTGGAACGGTGAGAGATTCAGTGGGGTACCAGAGATGCAACCCGACACTGATTCCATCATGTTTGATTTTTCATACGATAACCATGGTGTGCACTATTCCTTCTCCATTGGGAACCGCTCTATTTTGTCGAGGCTAATTGTGACTTCGGGTGGTGTACTTAAGCGTCGTACGTGGGTGCCAAGCAGCAACACATGGACCACCTTTTGGTATGCACCTAAGGACCAGTGTGATAATTTCAAAGCGTGCGGTTCTAATGGTTTGTGTGACTCTAACGCCTCGCCGGTGTGCACCTGTATGAGAGGGTTCAGTCCGAAGAACCAGCAGGCGTGGAGTTTGAGAGATGGGTCTGAAGGGTGTGTGAGGAACACGAATTTGGATTGTGGGACTGACAAGTTTTTGCATTTGGAGGACGTGAAGTTGCCTGAGACAAGTAGTGTGTTTGCGAACAGGAGCATGAACCTAGAAGAGTGTAAAGATTTGTGTCGCAGGAATTGTTCTTGCACTGCTTATGCCAACATTGAGGTCACAAACGGAGGAACCGGGTGCGTCACGTGGAGTGCTGAACTCATAGACATGAGAAAGTATCCCAGCGGTGGACAAGATCTCTTTGTCAGATTAGCAGCTTCTGATGCAGATGACACAGGATCTGCAGGTGGCTCTCACAAGACAAACCATATCGGCGAGATTGCAGGAATCACAGCTTCTGCAGCTGTAGTAATTGTGGGATTGGTTATGATTTTCTGGAAGAAGAGAAAAGTGTTAAGTATATCGAATTTGAAGACTACCCCCAGAGGTTCTTTCCAAAGAAGTAGAGAGTTGCTAACAAGTGACGGGGTATTTTCAACTAATAGAGAAAACTCGGGAGAAAGGAACATGGATGACATAGAGTTGCCAATGTTTGATTTTAATACCTTGACAATGGCCACAAACAACTTCTCTGAAGAAAATAAACTTGGACAAGGAGGGTTTGGTATTGTTTACAGGGGAAGGTTGATGGAAGGCCGTGATATTGCTGTCAAGAGGTTATCAAAAAACTCCGTGCAAGGAGTTGAAGAATTTAAGAATGAGGTGAAGTTAATTGTCAGACTTCAACATCGAAATCTTGTTCGGCTCTTTGGATGCTGCGTTGAGATGGATGAGAAGTTGCTAGTGTACGAGCACATGGAAAATAGAAGCCTTTATTCCATTTTGTTTGACAAAGCCAAAAAACACATGTTGGACTGGAATAGACGCTTCAGCATTATATGTGGCATAGCTAGAGGGATACTCTATCTGCACCATGATTCCAGACTCAGGATTATCCATAGGGATCTCAAGGCAAGCAACATTTTACTTGACAGTGAAATGAACCCAAAGATATCAGACTTTGGGATGGCTAGACTTTTTGGCGCGAATCAGACAGAAGGAAACACATTGAGAGTTGTTGGAACATATGGTTACATGTCTCCTGAATATGCTATGGACGGTACCTTCTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTAGCGCTGGAAATTATAACTGGGAAGAAAAATAGAGGATTCTATTACTCAAATGATGACATGAATCTTCTAGGGAATGCATGGAGGCAGTGGAGAGATGGCAGTGCATTGGAACTTGTTGATTCATCACTTGGTAATTCATATTCACCAGCTGAAGTTCTCAGATGCATACACGTTGGACTCTTGTGTGTCCAAGAACGTGCAGAAGATAGGCCAACAATGTCTTCAGTGATGTTGATGCTGAGTAGTGAATCTGCATTAATGCCACAACCCAGAAACCCTGGGTTTTCCGTAGGGAAGAATCCTGCGGAGACTGATTCATGTTCAAGTAAGCAAGATGAATCATGGAGTGTGAACCAAGTCACAGTCACATTGCTAGATGCTAGGTAG 2526 0.441 MPGFFFFLFCFLALHITISFSSDTLTPTQTLLTNQTLVSPTQVFALGFFSRTNSSWYLGIWYHNISNGPVVWVANRDNPLHNSTGFLTIGENKNMILTTPSGEPVWSSNVTKANNPILQLLDTGNLVLREANVTDPANYLWQSFDYPTDTLLPGMKMGWNLDTGVEKHLTSWKVEGKDPSSGDYSFKIDPRGIPEIFLMNENDRIYRSGPWNGERFSGVPEMQPDTDSIMFDFSYDNHGVHYSFSIGNRSILSRLIVTSGGVLKRRTWVPSSNTWTTFWYAPKDQCDNFKACGSNGLCDSNASPVCTCMRGFSPKNQQAWSLRDGSEGCVRNTNLDCGTDKFLHLEDVKLPETSSVFANRSMNLEECKDLCRRNCSCTAYANIEVTNGGTGCVTWSAELIDMRKYPSGGQDLFVRLAASDADDTGSAGGSHKTNHIGEIAGITASAAVVIVGLVMIFWKKRKVLSISNLKTTPRGSFQRSRELLTSDGVFSTNRENSGERNMDDIELPMFDFNTLTMATNNFSEENKLGQGGFGIVYRGRLMEGRDIAVKRLSKNSVQGVEEFKNEVKLIVRLQHRNLVRLFGCCVEMDEKLLVYEHMENRSLYSILFDKAKKHMLDWNRRFSIICGIARGILYLHHDSRLRIIHRDLKASNILLDSEMNPKISDFGMARLFGANQTEGNTLRVVGTYGYMSPEYAMDGTFSVKSDVFSFGVLALEIITGKKNRGFYYSNDDMNLLGNAWRQWRDGSALELVDSSLGNSYSPAEVLRCIHVGLLCVQERAEDRPTMSSVMLMLSSESALMPQPRNPGFSVGKNPAETDSCSSKQDESWSVNQVTVTLLDAR* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2017 841 SUPERFAMILY alpha-D-mannose-specific plant lectins 56 212 IPR036426 -
Pvu6g2017 841 SMART ntp_6 337 416 IPR003609 -
Pvu6g2017 841 SMART serkin_6 522 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2017 841 Gene3D - 17 144 IPR036426 -
Pvu6g2017 841 ProSitePatterns Protein kinases ATP-binding region signature. 528 550 IPR017441 GO:0005524
Pvu6g2017 841 Pfam Protein tyrosine and serine/threonine kinase 525 790 IPR001245 GO:0004672|GO:0006468
Pvu6g2017 841 PIRSF SRK 1 841 IPR024171 GO:0004674
Pvu6g2017 841 MobiDBLite consensus disorder prediction 812 826 - -
Pvu6g2017 841 Pfam Domain of unknown function (DUF3403) 795 841 IPR021820 GO:0004674
Pvu6g2017 841 ProSiteProfiles PAN/Apple domain profile. 337 417 IPR003609 -
Pvu6g2017 841 PANTHER - 10 840 - -
Pvu6g2017 841 ProSiteProfiles Protein kinase domain profile. 522 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2017 841 SMART blect_4 28 147 IPR001480 -
Pvu6g2017 841 Gene3D Hepatocyte Growth Factor 334 413 - -
Pvu6g2017 841 Pfam S-locus glycoprotein domain 206 316 IPR000858 GO:0048544
Pvu6g2017 841 CDD PAN_AP_plant 333 417 - -
Pvu6g2017 841 ProSiteProfiles Bulb-type lectin domain profile. 22 141 IPR001480 -
Pvu6g2017 841 Pfam D-mannose binding lectin 70 173 IPR001480 -
Pvu6g2017 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Pvu6g2017 841 SUPERFAMILY Protein kinase-like (PK-like) 500 793 IPR011009 -
Pvu6g2017 841 MobiDBLite consensus disorder prediction 800 826 - -
Pvu6g2017 841 Pfam PAN-like domain 337 402 IPR003609 -
Pvu6g2017 841 CDD B_lectin 34 147 IPR001480 -
Pvu6g2017 841 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 840 - -
Pvu6g2017 841 Gene3D Transferase(Phosphotransferase) domain 1 598 802 - -
Pvu6g2017 841 CDD STKc_IRAK 528 793 - -
Pvu6g2017 841 Gene3D Phosphorylase Kinase; domain 1 496 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2017 Pvu-Chr6 30137334 30142218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2017 437 808 Receptor kinase-like Gene Family AT4G23190 51.587 4.06e-129 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu6g2017 PK_Tyr_Ser-Thr 8.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2017 - - gmx:100797331 1429.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2266 2 38374827 38377676 Pvu6g2017 6 30137334 30142218 PCT