Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2016 ATGGCGGCCATGTCCATCTCCCTTCTGTTTCTCTTCTCTTTCATCTCTTTCCACAATCTCCTTTCCTTCGCGGCAAGTTCAAATATCAGGATCACGCACGATGTCGTCATCAGGGACAACGACCGTGAGACACTGGTGTCTGAAGAGCTCAACTTCGTCATGGGTTTCTTCGGTTTAGACAACTCCTCTTCCCGCTACGTCGGAATTTGGTACCACAACATTCCCGCGACACCTGTTATATGGGTCGCAAACCGCGACAAACCCATCAATGGCACCGGAGGATCCATCACTGTTGCCAATGATGGCAACCTCGTAGTCCTCGATGGAGCCAAGAACCTTGTCTGGTCCACCAACGTTTCCATCGATAGCAGCAACAAAAACTGCTCGGCGACGCTTCATGACACTGGTAACCTCATTCTCTCGAGCGAAAAGAAAGAGTTGTGGCATAGCTTTGAGAATCCAACGGATACATTCATGCCTGGTATGAGGGTTCCAGTGGGGGCTGCAACTGGGAAGAGTGGCGGCTATGTGTTCTCTTCATGGAAATCGTCAACGGATCCTTCGAGGGGAAACTACACTATGGGGGTGGATCCTGAAGGGTTACCTCAGATAGTGGTTTGGGAAGGAGACAAAAGAAGGTGGAGAACGGGGTATTGGGATGGTATAACGTTTGAAGGGGTGTCTATGAGAGGAAATTTTCTTTATGGTTTTACGCTTAATGGGGATGGTAAAGGAGGTAGGTACTTCATTTATAACCCGTTAAACGGCACTGATAAGGTGAGGTTTCAAATGGGGTGGGACGGCTATGAGACAGAATTCAGGTGGAATGAGGATGAGAAACGTTGGGATGTGATTCAAAGAGGGCCTTCGCATGAGTGTGAGGTTTACAATAAGTGTGGGAGTTTCGCGGCGTGTGATGTGTCCCCTTCGGATTTACCTGTTTGTGCTTGCATACGAGGTTTTGAACCCAAGAGTAGGGATCAGTGGAATAAGGGGAACTGGTCCAGTGGGTGTACGAGGATGACTCCACTCAAGGCTCAGAGGAAGAATGTTACTTCCGCCGGCACTACTCAGGTTAGTGTTGGAGAGGATGAGTTCTTGGAGCGTAGGTCTATGAAGTTGCCGGATTTGGCACGTGTGGTTGGCACGAATGATTGTCATCAAGTGTGTTTGAACGATGATTCTTGTACGGCTTATGCCAATGTTAATGGAATAGGGTGCATGGTGTGGAATGGGGATTTGGTTGACATTCAACGTTATGATGGTGGAGGAAATACACTGCATATCCGTCTCGCTGATTCTGATTTAGATGATGGAGGTAAAAAGAACATCATTGCGATAATATCTGCTGTTGTGGCGGGGTTCATCTGCCTAGGAATCTTTGTGTGGCTGGTGTATAGATTCAGGGGTAAACTTAAAGTTTCCCCAGCTTCTTGTTGCAAGAATAGTGATGTACTGCCAGTTTTTGATGGAAGCAAGAGCAGAGACATGTCAGCAGAATTTTCAGGATCAGCTGACCATAGTTTGGAGGGCAGCCAACTAAGGGGGCCAGAATTTCCACTTTTCAATTTCAGTTGCATTTCAGTAGCCACAAACAATTTCTCAGAAGAAAATAAGCTTGGGAAAGGGGGTTTTGGCCCTGTCTACAAGGGAAAGCTTCCAGACGGAGAACAAATAGCTGTTAAGAGGCTTTCAAGACGGTCTGGCCAAGGTTTAGAGGAGTTCAAGAATGAAATGATGCTGATAGCCAAACTACAGCACCGAAATCTGGTTAGACTAATGGGTTGTTCTATTCAAGGGGAAGAGAAGTTGCTGGTATATGAATACATGCCAAACAAAAGCTTGGATTGTTTTTTATTTGATCCATTCAAACAAACACAACTAGATTGGAGAAGACGGTTTGAAATCATTGAAGGCATTGCAAGAGGATTACTCTACTTGCACCGAGATTCAAGGCTTAGAATAATTCATCGAGATTTAAAAGCGAGTAACGTTTTGTTGGATGAAAGCATGAATCCAAAAATATCAGACTTTGGATTGGCTAGGATATTTGGTGGGAACCAGAATGAAGCCAATACAAATAGAGTAGTTGGTACATATGGTTATATGGCCCCTGAATATGCTATGGAAGGTCTGTTTTCGGTCAAATCTGATGTATATAGTTTTGGTGTATTACTACTAGAAATTTTGAGTGGCCGCAGAAACACCAGTTTTCGTCACACTGATGACTCCAGCCTCATAGGATATGCGTGGCATCTTTGGAATGAACAGAGAGCAATGGAGCTAGTGGATCCATGCATTCGTAATTCTAGTCCTAAAAGCAGAGCTTTGAGATGCATACACATAGGGATGTTGTGTGTGCAAGATTCAGCAGCTCAGAGACCGAACATGTCTGCTGTGGTGTTGATGCTGGAAAGTGAAGCAACAACTCTTCCCACGCCTACGCAACCTTTGATTACTTCCATGAGGAGATCTGAGGACAGACAATTTTACATGGAGGGCCTTGATGTTTCAAATGATTTGACAGTCACAATGGTGGTAGGGAGATAG 2550 0.4522 MAAMSISLLFLFSFISFHNLLSFAASSNIRITHDVVIRDNDRETLVSEELNFVMGFFGLDNSSSRYVGIWYHNIPATPVIWVANRDKPINGTGGSITVANDGNLVVLDGAKNLVWSTNVSIDSSNKNCSATLHDTGNLILSSEKKELWHSFENPTDTFMPGMRVPVGAATGKSGGYVFSSWKSSTDPSRGNYTMGVDPEGLPQIVVWEGDKRRWRTGYWDGITFEGVSMRGNFLYGFTLNGDGKGGRYFIYNPLNGTDKVRFQMGWDGYETEFRWNEDEKRWDVIQRGPSHECEVYNKCGSFAACDVSPSDLPVCACIRGFEPKSRDQWNKGNWSSGCTRMTPLKAQRKNVTSAGTTQVSVGEDEFLERRSMKLPDLARVVGTNDCHQVCLNDDSCTAYANVNGIGCMVWNGDLVDIQRYDGGGNTLHIRLADSDLDDGGKKNIIAIISAVVAGFICLGIFVWLVYRFRGKLKVSPASCCKNSDVLPVFDGSKSRDMSAEFSGSADHSLEGSQLRGPEFPLFNFSCISVATNNFSEENKLGKGGFGPVYKGKLPDGEQIAVKRLSRRSGQGLEEFKNEMMLIAKLQHRNLVRLMGCSIQGEEKLLVYEYMPNKSLDCFLFDPFKQTQLDWRRRFEIIEGIARGLLYLHRDSRLRIIHRDLKASNVLLDESMNPKISDFGLARIFGGNQNEANTNRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLEILSGRRNTSFRHTDDSSLIGYAWHLWNEQRAMELVDPCIRNSSPKSRALRCIHIGMLCVQDSAAQRPNMSAVVLMLESEATTLPTPTQPLITSMRRSEDRQFYMEGLDVSNDLTVTMVVGR* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2016 849 SMART serkin_6 534 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2016 849 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 187 IPR036426 -
Pvu6g2016 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
Pvu6g2016 849 PIRSF SRK 1 849 IPR024171 GO:0004674
Pvu6g2016 849 CDD STKc_IRAK 540 805 - -
Pvu6g2016 849 SUPERFAMILY Protein kinase-like (PK-like) 519 832 IPR011009 -
Pvu6g2016 849 Pfam Protein tyrosine and serine/threonine kinase 537 802 IPR001245 GO:0004672|GO:0006468
Pvu6g2016 849 Pfam S-locus glycoprotein domain 214 325 IPR000858 GO:0048544
Pvu6g2016 849 Gene3D Transferase(Phosphotransferase) domain 1 610 814 - -
Pvu6g2016 849 ProSiteProfiles PAN/Apple domain profile. 361 432 IPR003609 -
Pvu6g2016 849 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 6 849 - -
Pvu6g2016 849 Pfam D-mannose binding lectin 79 182 IPR001480 -
Pvu6g2016 849 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 6 849 - -
Pvu6g2016 849 SMART ntp_6 361 431 IPR003609 -
Pvu6g2016 849 Gene3D - 27 151 IPR036426 -
Pvu6g2016 849 CDD B_lectin 43 154 IPR001480 -
Pvu6g2016 849 CDD PAN_AP_plant 363 432 - -
Pvu6g2016 849 Pfam PAN-like domain 362 417 IPR003609 -
Pvu6g2016 849 Gene3D Phosphorylase Kinase; domain 1 499 609 - -
Pvu6g2016 849 SMART blect_4 34 154 IPR001480 -
Pvu6g2016 849 ProSiteProfiles Protein kinase domain profile. 534 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2016 849 ProSiteProfiles Bulb-type lectin domain profile. 28 153 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2016 Pvu-Chr6 30130648 30134447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2016 446 817 Receptor kinase-like Gene Family AT4G23230 54.960 1.28e-133 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu6g2016 PK_Tyr_Ser-Thr 8.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2016 - - gmx:102660295 1432.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2270 2 38407547 38411168 Pvu6g2016 6 30130648 30134447 PCT
Pvu6g2016 6 30130648 30134447 Pvu2g2267 2 38384920 38392920 PCT