Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2002 ATGGGGGGGAAATCGACGCCGGCGGAGGAAGGAAAAGTGGTACCGGAACATCTACGGTGCAACCGGACGGACGGGCGGCAATGGCGGTGCAGGCGGCGAGTGATGGAAAACCTAAAGCTCTGCGAGATTCACTACCTGCAAGGTCGGCATCGGCAGAACAAGGAGACGGTTCCGGAGTCGCTGAAGCTTCAGAGAAAGAGGCAAAACGATGTCGTTGAGACTAAGATTGGGGCGAAGCGGAAGCGCAAATCGAGAGAAGCATTGGTCAATAGGAGGAACCAATTGGAGCTCATCAGGATGGTTCTGCAGAGAGAGGTTGAGAAGAAGAAGAAGAAGGAATCGCAATTGAATTTGCCTTTGAATTTGAATTTGAATTTGCACTCCAATCACGAGTTGAGGAAGGAGTTGCCGAACGGGGTTATGGCCATCGCTTCCGCTTCGACGCCCAATGTGGCTTCTTGTTCTCGTTACTTCAGGTCCAAGAATGTTGAGAGGGGTTCTGTTGCGCAGTGTGGACGAAACTTGAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCCTGCACTCTTATAAGGTGCTCAAACTGCCAGAGAGAGTTTTTCTGCATGGATTGCATTAAACAAAGGTATTTTGACACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGCCGAGGAACTTGTACCTGTAAAGATTGCTTGGCACGTCAACATGAAGACAGTGAAAGTAAGGAACATTTGGCTGGTAAAAACAGAGTTGATAGGATATTGCATTTTCATTATTTGGTATGTATGCTCCTTCCTGTACTGAAACAAATAAAAGAAGACTACCACGTGGGTGTAGAAACAAAAGCGAAAATTAAAGGAAAAAGAATTAATGACATTATCATCAAACCAGTCAAGTTTGGCTGCAATGAGAAAAATTACTGCAATCACTGCAAAACACCCATTTTGGATCTTCATAAAAGCTGCCTTAGTTGCTCATACAGTCTTTGCTTAAGTTGTTCTCACGCATTAAGTCAAGGAAGAATCTCTGAACAAAACAACTATTCTATATCCAAGCTACCTGACAGAATAAGTGCTTGCATTTCTAGCGAAAGATACCTATTGGATGATAAGGCCATTTCTAATGGCAATTTAACTGATACCTCAATGTTAACAGAGTGGACAAGTTGTAATGGTGCTGCCATGGTATCATGCCCACCTACAAAGCTTGATGATTGTGGTAATAGCCACCTTGATCTGAACTATGTTTTTCCCTTAAGTTGGATCAAAGAAATGGAAGCAAATGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTTGGATAAAAGTTCAAGTTGCCCAATGTGCATTGACAAAGATCATAAAACTAGCAGATACAAGCAGCTACCGGAAGCGGCTCAGAGGGAAGATTCTAATGATAATTATTTGTTTTATCCTACAGTTTTTGACATCGACAGCAATCATTTTGAACACTTTCAGAAACACTGGGGAAGAGGCCATCCTGTAGTAGTGAGAGATGTGCTGCAAAGTACACCAAACCTTAGTTGGGATCCACTGTTCATGTTCTGCACTTATCTTGAGAGGAGCATGACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGACTAACGTTAGGCAGTATTTTACTGGGTCTCTTAAATGTCAACCAAAGAAAAATACTTGGCATGAGATGCTGAAACTTAAAGGGTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGAACTAATTGATGCTCTTCCAATTCAAGAATACATGAATCCTTTGTCAGGTCTTCTGAATTTAGCTGCAAATTTGCCACAGGGGAGTACAAAACATGACATAGGACCATATCTTTATATTTCATATGGCTGTGCTGATGATGAAGCTGATTCCGTGACAAATCTCTGTTATGACTCATATGACATGGTTAATGTTATGGCACATTCCATGGACATCCCTCTGTCCACTGATCAGCTATCTAGAATAAGCAAGTTACTTAAAAAACACAAAGTTCTATGTCAAAGGGTGTCATCTAAAACTACTGCTGAGCATGCAGAAGACAGGGAACAAAATGAAATGCAAAGTTTGGTAAGAGAAGGAACTGACTTTTTAAGGAGAGTCAATAGAACTTCTTGCATCTCTAGTGAAGCCAAAACAATATGCAATCAGAATTTAGACACCAATATTTCCGGTGATGAAGAATGTGGTTCTTATTCTGAAACTGAAAAGGCACAACGCTCTTTACCTTTCCACAGCATAGTTCTAAGCACTGAAATGTCTCCAGATCATAATCCTAGAAATTCCTTTGAAAACTCAGACAATGTTAAAAGGAAGAAGGCTACAGCGAATGCTGGGGCTCAATGGGATGTCTTTCGAAGGCAAGATGTGCCAAAGCTCTTAGAATACCTTAAAAGACACTCTGATGAATTTTCACATGCTAGTGAACATCACGAGAAGATGATTCATCCACTTCTTGATCAGAGCTTCTTTCTTGACAATACTCACAAGATGAGACTTAAGGAGGAATTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTGTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTTCATGTGGAATTGGAATTTGTATCCCCTGAGAATGTTGCTGAGTGTATCCAATTGGTTGATGAGGTCCGGCTGCTTCCAGAAGACCACCCCGCAAAAGTAGAAAAACTGGAGGTGAAAAAAATGGCCCTTCATAGCATGAGTACAGCAATAAAGGAAATACGTGAGCTTACATGCAGAACATGA 2874 0.4137 MGGKSTPAEEGKVVPEHLRCNRTDGRQWRCRRRVMENLKLCEIHYLQGRHRQNKETVPESLKLQRKRQNDVVETKIGAKRKRKSREALVNRRNQLELIRMVLQREVEKKKKKESQLNLPLNLNLNLHSNHELRKELPNGVMAIASASTPNVASCSRYFRSKNVERGSVAQCGRNLKKGRRKKCHWCQRSDSCTLIRCSNCQREFFCMDCIKQRYFDTQNEVKMACPVCRGTCTCKDCLARQHEDSESKEHLAGKNRVDRILHFHYLVCMLLPVLKQIKEDYHVGVETKAKIKGKRINDIIIKPVKFGCNEKNYCNHCKTPILDLHKSCLSCSYSLCLSCSHALSQGRISEQNNYSISKLPDRISACISSERYLLDDKAISNGNLTDTSMLTEWTSCNGAAMVSCPPTKLDDCGNSHLDLNYVFPLSWIKEMEANAEEIVCSYDFPETLDKSSSCPMCIDKDHKTSRYKQLPEAAQREDSNDNYLFYPTVFDIDSNHFEHFQKHWGRGHPVVVRDVLQSTPNLSWDPLFMFCTYLERSMTRYENNKDLLEACLDWFEVETNVRQYFTGSLKCQPKKNTWHEMLKLKGWLSSQLFKEQFPAHFAELIDALPIQEYMNPLSGLLNLAANLPQGSTKHDIGPYLYISYGCADDEADSVTNLCYDSYDMVNVMAHSMDIPLSTDQLSRISKLLKKHKVLCQRVSSKTTAEHAEDREQNEMQSLVREGTDFLRRVNRTSCISSEAKTICNQNLDTNISGDEECGSYSETEKAQRSLPFHSIVLSTEMSPDHNPRNSFENSDNVKRKKATANAGAQWDVFRRQDVPKLLEYLKRHSDEFSHASEHHEKMIHPLLDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPCGCPYQIRNPKCCVHVELEFVSPENVAECIQLVDEVRLLPEDHPAKVEKLEVKKMALHSMSTAIKEIRELTCRT* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2002 957 Gene3D Cupin 489 928 - -
Pvu6g2002 957 ProSiteProfiles Zinc finger RING-type profile. 183 229 IPR001841 -
Pvu6g2002 957 MobiDBLite consensus disorder prediction 779 802 - -
Pvu6g2002 957 PANTHER PROTEIN B160 12 956 - -
Pvu6g2002 957 SUPERFAMILY Clavaminate synthase-like 496 945 - -
Pvu6g2002 957 Pfam JmjC domain, hydroxylase 808 903 IPR003347 -
Pvu6g2002 957 Pfam WRC 15 55 IPR014977 -
Pvu6g2002 957 ProSiteProfiles JmjC domain profile. 616 920 IPR003347 -
Pvu6g2002 957 SMART cupin_9 597 920 IPR003347 -
Pvu6g2002 957 Coils Coil 85 112 - -
Pvu6g2002 957 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 12 956 IPR045109 GO:0032454|GO:0033169
Pvu6g2002 957 ProSiteProfiles WRC domain profile. 14 58 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2002 Pvu-Chr6 30046299 30052736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2002 11 54 GRF Transcription Factor Family AT2G22840 50.000 2.14e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pvu6g2002 JmjC 2.9e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2002 K15601 - gmx:100802129 1630.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2274 2 38444637 38450718 Pvu6g2002 6 30046299 30052736 PCT