Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1999 ATGGGAAGAGCACCTTGTTGTGAAAAGAATGGCCTCAAGAAAGGACCATGGACAACTGAGGAGGATCAGAAACTCGTTGATTACATTCAGAAACATGGATGTGGGAATTGGAGGACACTCCCAAAGAATGCTGGGTTGCAGAGATGTGGAAAGAGTTGCCGTCTTCGTTGGACAAACTATCTCCGACCAGACATAAAGCGAGGTCGGTTTTCATTTGAAGAGGAAGAGACAATAATTCAGCTCCATAGCATTCTTGGCAACAAGTGGTCTGCGATTGCTTCTCGTTTACCAGGAAGAACAGACAACGAAATCAAGAACTACTGGAACACACACATTAGAAAGAGGCTTTTGAGGATGGGAATTGACCCTGTGACACACAGTCCTCGACTTGATCTATTGGACATCTCTTCCATTCTAAACGCATCTTTCTATGGTTCATCACAAATGCTCCTTGGCATGCAGCAGTCTATGGTGAACCCCGAGCTTTTAAGGTTGGCTTCTTCGCTCTTCTCCTCCTCACACCAACACAAAGACCTTGACGTGTGTGTTCCAAAGGGTCAACAAAACCAGGTTTGCGATCCACAAGTTCAGAATCATGTTCCACACTTGGTACAATTTCAAGATCCAGTTCAAGAGGTGCCTGCATGTGTTTCATTGCCTCTCTCTCAGCCACAGTTAGTTGAGCCCCATAATGTGGACCCATATCCATCATCAACTTTCTCAGACTTCACTTACCAACAACATTCTCATGATGATCAGATAATTAGTGATTGGCACAAAGATGGGGTTGCTTTAAGCACTTTAACAGATGATTATGTCCCTCAGTTATCAAGCTATAATTATTATAGTTCCGATGATCTCATGTATCCTCCATTCTCCCAACCTTCAACTTTCCATTCCAATAACAGCAATCAGAACTTCAGCTTCGCTTCAGTTCTATCCACACCTTCGTCAAGCCCCACACCGTTGAATTCAAACTCCACGATAATCAATGGGAGCAACACAGAAGACGAGAGAGATCAAAGCTATGGCAGTAGCAGCATGTTGAAATTTGAAATCCCAGATATTTTAGATGTGAATGAGTTCATGTAA 1092 0.4322 MGRAPCCEKNGLKKGPWTTEEDQKLVDYIQKHGCGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDISSILNASFYGSSQMLLGMQQSMVNPELLRLASSLFSSSHQHKDLDVCVPKGQQNQVCDPQVQNHVPHLVQFQDPVQEVPACVSLPLSQPQLVEPHNVDPYPSSTFSDFTYQQHSHDDQIISDWHKDGVALSTLTDDYVPQLSSYNYYSSDDLMYPPFSQPSTFHSNNSNQNFSFASVLSTPSSSPTPLNSNSTIINGSNTEDERDQSYGSSSMLKFEIPDILDVNEFM* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1999 363 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu6g1999 363 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu6g1999 363 CDD SANT 69 112 IPR001005 -
Pvu6g1999 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu6g1999 363 Gene3D - 13 66 - -
Pvu6g1999 363 CDD SANT 16 61 IPR001005 -
Pvu6g1999 363 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu6g1999 363 MobiDBLite consensus disorder prediction 311 345 - -
Pvu6g1999 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 358 - -
Pvu6g1999 363 Gene3D - 69 116 - -
Pvu6g1999 363 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu6g1999 363 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pvu6g1999 363 PANTHER TRANSCRIPTION FACTOR MYB41 1 358 - -
Pvu6g1999 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu6g1999 363 SMART sant 13 63 IPR001005 -
Pvu6g1999 363 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1999 Pvu-Chr6 30014967 30016543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1999 1 363 MYB Transcription Factor Family AT4G21440 52.756 1.25e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu6g1999 Myb_DNA-binding 9.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1999 K09422 - gmx:778071 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2275 2 38464409 38465933 Pvu6g1999 6 30014967 30016543 PCT