Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1994 ATGTCTAGCGTCACTTTCTTGCAGCGTCTCTCTGGCGCTTTCCGTGAAAACCAGTCACATTTTAAGCTTGTGCTCCTTTGCACCGCCGTAAGTGGTGGTGGTCTTTTGGCTTATGGTGAGAGTGTTGCACCTGAAGAGGCAATTACTGAGAAGAAAAAGGTGGTGGTTCTGGGAACTGGTTGGGCATCCACAAGTTTCTTGAAGAATCTGAACAATCCGAAATATGATGTTCAAGTGGTTTCGCCGCGGAATTACTTTGCTTTCACTCCTTTGCTGCCCAGCGTTACTTGCGGGACCGTCGAAGCACGCAGCATTGTTGAACCCATCCGCAATATTTTTAAGAAGAAAAAGGTCGATGTACAATTCAGTGAAGCAGAATGTTTCAAGATTGATGCAGAAAATAGGAAAGTTTATTGTCGATCAAGTTTGAACAATAATTTGAATGGGCAAGAAGAATTCGTCGTGGATTATGACTACTTAATAATTGCCGTGGGCGCTAATGTCAACACATTTAATACTCCAGGAGTGATGGAGAATTGCCATTTTTTGAAGGAAGTTGAAGATGCTCAAAAGATTAGAAGAACAGTTATTGACTGCTTCGAGAGAGCAAATTTGCCTGATGTAAGTGAAGATGAGAAGAAGAGAATTCTTCATTTTGCTATTGTTGGAGGTGGACCAACTGGAGTGGAGTTTGCAGCCTCACTTCATGATTTTGTCAATGAAGATTTGGTGCGTTTATATCCTGGGATAAAAGATTTGGTTAAAATTACTCTTCTGGAGGCTGCAGATCATATCTTGGGCATGTTTGACAAGAGAATCACTGTTTTTGCTGAAGACAAGTTTCGAAGAGATGGGATTGATGTGAAAACAGGATCCATGGTTGTCAAGGTATCTGAGAAAGAAATTTCAACTAAAGAACTGAAAAATGGAGGAGAGACTAAGACAATACCGTATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATTAAAGATTTTATGACTCAAATCGGCCAGGCTAGCAGGCGTGCCGTAGCTACTGACGAATGGTTGAGAGTTGAAGGGTGCAACAATGTGTATGCACTCGGTGATTGTGCTACGATAAACCAGAGAAAAGTCACGGAAGATATTGCGGCTATCTTTAAGAAGGCTGACAAAAACAATTCTGGAACACTAACGGTTAAAGAATTTCAAGAGGTCATGAAAGACATCAGTGAAAGATACCCTCAGGTTGAGCTATATCTGAAGAATAAGCAAATGCGCAACATTGCTGATTTATTGAAGGAAGCCAAGGGGGATGATAAAAAGGAATCAATTGAACTGAATATTGAAGAACTTAAAACAGCACTTTCCAACGTGGATTCTCAAATGAAATTTCTTCCTGCTACAGCCCAGGTTGCATCTCAGCAAGGTACATACCTGGCCACGTGTTTTAACCGGATGGAAGAGTGTGAAAAAAATCCAGAGGGTCCTCTCAGGTTCAGGGGAGAAGGTCGCCATCGGTTCAAACCCTTTAGGTACAAGCATTTAGGTCAATTCGCTCCTTTAGGAGGAGAGCAGACAGCAGCCCAACTTCCTGGAGATTGGGTTTCAATTGGTCATAGCAGTCAATGGTTGTGGTATTCTGTCTATGCAAGCAAGCAAGTAAGTTGGCGCACAAAAGCATTGGTAGTTTCAGACTGGACAAGACGTTTTATTTTTGGAAGGGACTCCAGTAGCATCTGA 1734 0.4221 MSSVTFLQRLSGAFRENQSHFKLVLLCTAVSGGGLLAYGESVAPEEAITEKKKVVVLGTGWASTSFLKNLNNPKYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIFKKKKVDVQFSEAECFKIDAENRKVYCRSSLNNNLNGQEEFVVDYDYLIIAVGANVNTFNTPGVMENCHFLKEVEDAQKIRRTVIDCFERANLPDVSEDEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLVRLYPGIKDLVKITLLEAADHILGMFDKRITVFAEDKFRRDGIDVKTGSMVVKVSEKEISTKELKNGGETKTIPYGMAVWSTGIGTRPFIKDFMTQIGQASRRAVATDEWLRVEGCNNVYALGDCATINQRKVTEDIAAIFKKADKNNSGTLTVKEFQEVMKDISERYPQVELYLKNKQMRNIADLLKEAKGDDKKESIELNIEELKTALSNVDSQMKFLPATAQVASQQGTYLATCFNRMEECEKNPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTKALVVSDWTRRFIFGRDSSSI* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1994 577 Coils Coil 439 459 - -
Pvu6g1994 577 SUPERFAMILY FAD/NAD(P)-binding domain 218 372 IPR036188 -
Pvu6g1994 577 SUPERFAMILY FAD/NAD(P)-binding domain 51 270 IPR036188 -
Pvu6g1994 577 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Pvu6g1994 577 Gene3D - 451 562 - -
Pvu6g1994 577 Pfam EF hand 380 406 IPR002048 GO:0005509
Pvu6g1994 577 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Pvu6g1994 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Pvu6g1994 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
Pvu6g1994 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Pvu6g1994 577 PANTHER NADH DEHYDROGENASE 3 577 IPR045024 GO:0003954|GO:0006116
Pvu6g1994 577 SMART efh_1 379 407 IPR002048 GO:0005509
Pvu6g1994 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 374 IPR023753 GO:0016491
Pvu6g1994 577 PANTHER NAD(P)H DEHYDROGENASE B2 3 577 - -
Pvu6g1994 577 Gene3D - 42 428 - -
Pvu6g1994 577 SUPERFAMILY EF-hand 368 464 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1994 Pvu-Chr6 29977155 29983021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1994 1 577 Chloroplast and Mitochondria Gene Families AT4G21490 72.899 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1994 K03885 - gmx:100797657 1092.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2281 2 38574051 38578842 Pvu6g1994 6 29977155 29983021 PCT