Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1987 ATGGCTTCGGCTTCTTCTTCTTCGTCCAAGCTGTGCTTTAATTCTGACTGCAAGGAATTGAGGCCCGAAAGACCTAAGAAAGGTTGGAGGCTCCGTAGCGGAGAGCTAGCCGAGCTCTGTGATCGATGCGGCTCTGCTTTTGAAGACGGGAAGTTCTGTGAAATTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTAGAAAGAGAATTCATTGTGGATGTATTGTTTCAAGTCATTCCTTCATGTTGTTGGATCCTGGAGGAATTGAATGTTATACATGTGCCCGCAAAAATATTATTATGCCTTCTAACCTGCCATGGCCACAATCTTTTTCCCTTCAAAATCGTTTATCGGATAGACTTAGAGATCTATCTGCTAAAGGTTGGAATCAGTTGGCTGGATCAGGTCCTGTACCCTGGAAGCAAGCGCCCAGTCTGTTCAATTCTGCTTCTTCATCCGACCTGATCTCAGATGTTCCTTCTTTAGCTGAATTATCCAGTAGCTTTGACAAAATGTATTGCAATGAAAGGTTACCTGCCTCAGCTTTGGAAAAGAAAAGTGAGGATTTTCCTGGATTACCAGTTCATTGGAATGTCACCATTTGCCCACGAGAGATGAAGCATATGAATGGAATGAGGAATGAGGACAAAGCAAGTTCATGTTTAAATATGTGTCAGCAGCCTTCTTCTATGAAGGAAGAGTCATCTCCTCAACCATTTGGTTTGCCTGTACCTAATTCATGCCAAAACGAAAGAAATGGTCAACTTGGGGTAACTGGAAGTCACCCTCAACAGACTCCACCACCTCCAGGAAAGCAATTTAATGGCACTATGCATTTAGCACCTGACTCATCAGGTGAGGCTCAGGTTCGCAATGGGCGGCCTCGAGCAGATGCCCGAGGAAGAAACCAGTTACTGCCACGGTACTGGCCCAGGTGTACTGATCTAGAACTACAACAAATATCCATAGATTCAAATTCTGTAATTACTCCCTTGTTTCAAAAAACCTTGAGTGCAAGTGATGCTGGACGAATTGGACGTTTAGTCCTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCGCTTAAAATCCTTGATGCAAAAGGAAAGGAGTGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTACAGGCTGGTGACACTGTAACATTTAGCCGGTTGGAGCCAGAGGGAAGGTTGGTTATGGGATTTAGAAAGGCTTCAAGTGCTGCGCCATCTGACCAGGACAATGAAACCAATAAGTCTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCTGATCCTAATTCATGGTCTAAAGTTGATAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGTAAATCATTAATATCTAGGAAAAGAAAGAGCGGCTTATTGGGCTCAAAGAGTAAACGACTAAGAATTGAAAATGAGGATTTAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGTCTTCTCCGCCCTCCTCCTAGCCACATTCCGAGCATTGTTGTGATTGAAGGTTTTGAATTTGAGGAATACGAGGAAGCTCCAGTGCTTGGGAAGCCAACAATTTTTACCAGTGATAATGTGGGTGAAAAGATCCAGTGGGCTCAATGCGAAGATTGTCTCAAGTGGCGCAAATTACCAGCTAGTGCGCTTCTTCCATCAAAATGGACGTGTTCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCACAAGAGCTGACAGCAGAACAACTTGAGAATTTGCTACCTCCGTGTAATTCAGCTGTTCCCAAGAGAATGAAGGCCACCAAACAGGATCCTGATAATGCTGAAGCTTTGGAGGGACTTGACACCCTCGCAAATTTAGCTATCCTGGGAGAGGGTGAGGCACTCCCAGCGTCAGCCCAGGCCACAACTAAGCACCCACGCCATAGACCTGGCTGTTCTTGCATTGTTTGCATTCAACCTCCCAGTGGAAAGGGCCCCAAGCATAAACAGACATGCACATGTAATGTATGCTTAACAGTGAAGCGACGTTTCCATACCCTTATGTTACGGCGTGAGAAGAAGCAATCCGAAAAGGAAGCAGAGACAACTCGCAAAAAACAACAGCAACAACATCCTCAACCTCTACCTTCGTCTGAAATTTTGCTTGACGAAGATTCATTACCCTGTAGTAACACAGGTGATAGCAGCCCAAACCAGAACAGAGAGGGTAATGATGGTTCTGATGATGATCCTAATAGAATAAAATCATCTGCTTCACCATTCAAAGGCCAAATTGACCTCAATATCCAGCCAGAGCGAGAAGAAGAATTGTCACCTGGTTCAGATTCTGGTGGCATGATGAAGTTGCTCCATGATGCTGCCACTGAGAGATATCTGAAGCAGCAGACTGTGAACTCCGGTACTGGAGATTCTGCAGGAAGTCAGTCACAGCTGGTAGGAGATGCAATGAGGGAAGATAAACTTAGCAATGGTGTTACCCATGGCAGTAGTAGTCATAGTACTGATAGGAACATGGCCAATCTTTGTCCATGA 2637 0.4448 MASASSSSSKLCFNSDCKELRPERPKKGWRLRSGELAELCDRCGSAFEDGKFCEIFHSNASGWRSCETCRKRIHCGCIVSSHSFMLLDPGGIECYTCARKNIIMPSNLPWPQSFSLQNRLSDRLRDLSAKGWNQLAGSGPVPWKQAPSLFNSASSSDLISDVPSLAELSSSFDKMYCNERLPASALEKKSEDFPGLPVHWNVTICPREMKHMNGMRNEDKASSCLNMCQQPSSMKEESSPQPFGLPVPNSCQNERNGQLGVTGSHPQQTPPPPGKQFNGTMHLAPDSSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAAPSDQDNETNKSGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSGLLGSKSKRLRIENEDLIELKITWQEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDNVGEKIQWAQCEDCLKWRKLPASALLPSKWTCSDNSWDPERSSCSAAQELTAEQLENLLPPCNSAVPKRMKATKQDPDNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQSEKEAETTRKKQQQQHPQPLPSSEILLDEDSLPCSNTGDSSPNQNREGNDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDAATERYLKQQTVNSGTGDSAGSQSQLVGDAMREDKLSNGVTHGSSSHSTDRNMANLCP* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1987 878 CDD B3_DNA 334 435 IPR003340 GO:0003677
Pvu6g1987 878 MobiDBLite consensus disorder prediction 434 460 - -
Pvu6g1987 878 MobiDBLite consensus disorder prediction 719 878 - -
Pvu6g1987 878 MobiDBLite consensus disorder prediction 228 265 - -
Pvu6g1987 878 MobiDBLite consensus disorder prediction 858 878 - -
Pvu6g1987 878 SMART B3_2 336 437 IPR003340 GO:0003677
Pvu6g1987 878 MobiDBLite consensus disorder prediction 826 846 - -
Pvu6g1987 878 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 7 812 - -
Pvu6g1987 878 Pfam CW-type Zinc Finger 569 611 IPR011124 GO:0008270
Pvu6g1987 878 Gene3D - 568 621 - -
Pvu6g1987 878 SUPERFAMILY DNA-binding pseudobarrel domain 333 435 IPR015300 -
Pvu6g1987 878 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 7 812 - -
Pvu6g1987 878 MobiDBLite consensus disorder prediction 719 734 - -
Pvu6g1987 878 Gene3D - 314 440 IPR015300 -
Pvu6g1987 878 MobiDBLite consensus disorder prediction 439 455 - -
Pvu6g1987 878 MobiDBLite consensus disorder prediction 752 770 - -
Pvu6g1987 878 ProSiteProfiles Zinc finger CW-type profile. 564 614 IPR011124 GO:0008270
Pvu6g1987 878 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677
Pvu6g1987 878 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677
Pvu6g1987 878 Coils Coil 718 738 - -
Pvu6g1987 878 MobiDBLite consensus disorder prediction 228 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1987 Pvu-Chr6 29907570 29919566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1987 187 842 B3 DNA Binding Superfamily AT4G32010 43.768 5.36e-167 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu6g1987 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1987 - - vra:106775753 1696.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1987 6 29907570 29919566 Pvu6g1987 6 29907570 29919566 ECH