Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1968 ATGGGCAGCACCAAATTGGAGTTGCATGTTGGGATTTTTGTCATCTGCGTGGTGATTCTCGCAGGGACTTTCTGTGTTGGAGATACTGATATGGTTGATGTTGGTGCAATCAATAGTCTATATGTTTCTCTGGGGTCGCCACCACTTCAAGGGTGGAAATCCGTGGGAGGAGATCCATGTGCAGAACTGTGGCAAGGTGTTGCTTGTGTCTTCTCCAACATAACTGCTATACACCTCGGAAGCATGAATTTGGGAGGACAGCTGGGCAGCAATTTGAATTTCCCATCCATTTTAGAATTGGATCTTGGTAACAACCACATTGAAGGGCCTATTCCATTTACTTTGCCCCCTACTTTGAGGAGCTTGTCTCTCTCAGGAAATCGGTTAAACGGAAGCATTCCAGATGCCTTGTCCTTATTAACTCAGTTGTCAAACTTGGACTTTTCAAATAACAACTTGAGTGGTCAGCTGCCTTCTTCAACAGGGAGTTTATCATCTCTTACCACATTGCACTTGCAAAATAATCAACTTTCTGGGACCCTTTATGTGTTGCAAGACCTGCCTCTTCAAGATCTGGATATAGAGAACAATTTATTCTCTGGGCCAATTCCTCCAAAATTATTATCTATCCCTAATTTCAGTAAAAATGGGAATCCGTTTAATACTACTATCATTCCATCACCTCCTCTTGCGGCCCCTGCACCCATAGGCATGGTTCCACCCCCCCAAGAATCACCTTGGAAAGTGGGATATGGTCCTTCTGCCCTGACAGCACAAGTGCCTGCAAGTACTAGGAAGTCTTTTATTGCTAAGAGCATCATCTGGATTGCTGGTGCAGGTATTTTTGCTTTCATTGTATTGGGAGTTTGTCTTCTAATGTTATGTTGCATTAAGAGGAGGCCGGAGAAGAAAAATGCTAAGAAACTTGATGATGTGGGTGTGTTTACGGGACCTTTGAGTAAACCTACATGCAATGATTCTGTTTTTGGAACAACTAACCAAGAGGAAAAGGGTAAATATGAAGTACCAAATAGAAGTACAAATTCGATTCCTAAGGTTCAAGATGAAGAAGACGTATATTTGAAAGTAGTATCTGCAACTTCTGAATGCAATAATGGCCATCAATCAATGAACACTGGAGGGGGTTCCAAACTTTCACCCCTGCAGCCACCACCAAAACACTCTTTTCCAACCATTTCTGGTGAGAACATCACCATCAATCCGGCTACAGCTACCAAAGAAACTGAAAAACAAGTTATGACAAATTCCATCAAAGTTTACACTGTTGCATTGCTTCAACAATATACGAATAACTTTTCCCAAGAAAACTGTATTGGGGAAGGCACACTAGGGCCTGTTTATCGGGCTGAACTCCCTGATGGGAAGCTATTGGCTGTGAGGAAACTGGATGCTACTGCTTCCATGGGGCAGAGTCATGAGCAATTTCTTCAATTGGTGTCCAGCATCTCAAATATTCAACATGCAAATATTGTAAGGCTTATAGGCTACTGTGTTGAACATAGCCAACGACTACTTGTATATGAGTATTGCAGTAATGGAACCCTACATGATGTATTGCATGGGGACGATGATCAACGAATCAAACTTCCATGGAATGCACGCATTCGAGTAGCACTTGGAGCTGCCAGAGCTTTAGAGTATCTGCATGAGAACTTTCGGCCACCTATTGTGCATCGAAATTTTAGGTCTACTAATGTTCTTCTGAATGACAATTTGGAAGTGTGCATCTCTGATTGTGGATTAGGGCCATTGTTATCTTCTGGCTCTACGGGTCAGTTATCAGGACGTCTCCTTACTGCTTATGGTTACAGTGCTCCAGAATTTGAGTCTGGAAGTTATACGCAGCAAAGTGATGTCTTCAGTTTTGGTGTTGTAATGTTAGAACTCCTTACTGGACGAAAATCTCATGACAAGTCACGGCCTCGTGCGGAGCAATTTTTGGTCAGATGGGCTGTTCCTCAACTCCATGACATTGATACCTTGTCAAAAATGGTTGATCCCTGCTTAAGCGGAGCCTATTCTATGAAGTCTTTGTCACGTGTTGCAGATATTGTTTCTTCATGTCTACAGCGTGAACCTGAATTCCGACCTGCAATGTCGGAAATTGTTCAAGATCTCCTGCGAATGATGTGA 2154 0.4276 MGSTKLELHVGIFVICVVILAGTFCVGDTDMVDVGAINSLYVSLGSPPLQGWKSVGGDPCAELWQGVACVFSNITAIHLGSMNLGGQLGSNLNFPSILELDLGNNHIEGPIPFTLPPTLRSLSLSGNRLNGSIPDALSLLTQLSNLDFSNNNLSGQLPSSTGSLSSLTTLHLQNNQLSGTLYVLQDLPLQDLDIENNLFSGPIPPKLLSIPNFSKNGNPFNTTIIPSPPLAAPAPIGMVPPPQESPWKVGYGPSALTAQVPASTRKSFIAKSIIWIAGAGIFAFIVLGVCLLMLCCIKRRPEKKNAKKLDDVGVFTGPLSKPTCNDSVFGTTNQEEKGKYEVPNRSTNSIPKVQDEEDVYLKVVSATSECNNGHQSMNTGGGSKLSPLQPPPKHSFPTISGENITINPATATKETEKQVMTNSIKVYTVALLQQYTNNFSQENCIGEGTLGPVYRAELPDGKLLAVRKLDATASMGQSHEQFLQLVSSISNIQHANIVRLIGYCVEHSQRLLVYEYCSNGTLHDVLHGDDDQRIKLPWNARIRVALGAARALEYLHENFRPPIVHRNFRSTNVLLNDNLEVCISDCGLGPLLSSGSTGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSHDKSRPRAEQFLVRWAVPQLHDIDTLSKMVDPCLSGAYSMKSLSRVADIVSSCLQREPEFRPAMSEIVQDLLRMM* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1968 717 PANTHER LEUCINE RICH REPEAT KINASE 2 140 717 - -
Pvu6g1968 717 PANTHER LEUCINE RICH REPEAT KINASE 2 12 147 - -
Pvu6g1968 717 Gene3D Phosphorylase Kinase; domain 1 402 516 - -
Pvu6g1968 717 MobiDBLite consensus disorder prediction 372 402 - -
Pvu6g1968 717 Gene3D Ribonuclease Inhibitor 36 228 IPR032675 -
Pvu6g1968 717 Gene3D Transferase(Phosphotransferase) domain 1 517 716 - -
Pvu6g1968 717 SUPERFAMILY Protein kinase-like (PK-like) 418 713 IPR011009 -
Pvu6g1968 717 MobiDBLite consensus disorder prediction 326 349 - -
Pvu6g1968 717 ProSiteProfiles Leucine-rich repeat profile. 118 140 IPR001611 GO:0005515
Pvu6g1968 717 ProSiteProfiles Protein kinase domain profile. 439 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1968 717 SUPERFAMILY L domain-like 64 227 - -
Pvu6g1968 717 Pfam Protein tyrosine and serine/threonine kinase 442 713 IPR001245 GO:0004672|GO:0006468
Pvu6g1968 717 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 12 147 - -
Pvu6g1968 717 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 140 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1968 Pvu-Chr6 29772962 29779732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1968 23 717 Strubbelig Receptor Gene Family AT4G03390 50.536 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Pvu6g1968 PK_Tyr_Ser-Thr 7.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1968 - - gmx:100793423 1172.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2309 2 38880608 38888228 Pvu6g1968 6 29772962 29779732 PCT