Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1962 ATGATGGCGGATGAGGGATTCGGTTACGCGTGCTTCTTGGGCGGTGACGGGAACGCCGCCGGTGATGATAAGTTATCCATCGATCTGGAAACCTTTATGAGCGTTCTCGACGAGGATACCGATCCTTCCGAGAGTAGTCCCGAGGATTTTTCATTAAAAAATATTTCTCCTGGTGAATCTGGCATCCATGGTAGTTTTCTGCTTCAAAATGGGAATTCTGTTCTTGAATGTGATCATGAAAACCAGGGACCTTCACCACAGACTTTCTCTTTCCCAAATGCTCTTGCTGGTGGTTACATGGACCATGAAGGTGATGATTTTTGCATCACAGAAAGGACAGAAGTTTCCAATTGTGAGATGCCTGCTTACATAGGCACAAGGTTCCCTGATCCTGAGGTGAATTCAAGCAATGTAGCTGTTTGTGGAGATAGTTTGAAACTGACTATGTGGAAGTGTGAGAATGATAGCCAAATCAAGCATGTAGGGTATGGTGCAGAATCTGAACGTGCTTCACATGGTTCTATCATTGAGAATATTGATGCAAACTTTGATGATTATGCAACCTATATGAAAGACATAGTTGGACCTTCTGGTAAACAAGAAAATGACTCATGTACATCGTTTGTGGATGCTGATAGATCATCTCATGTTGCAACTTCAACTGATTCCTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTGACTATTATCCTTCTTTTAATATTTACCAAGGTATGGATGATAGACCTGCTCTTGCCAACACCTCTGATTGTTTGTTTAATGGTGCTTATCCTCACCTGTGGGAAAATGAAAAAATGACGAGGAACATGAAGGTTAATAAAATGGAGTTATTTACTGATACAAGTGGTGGCATGCATTCCATCATCAATGCGGGAATATCTTTTCAAGACACTCAATATACCTTCCCAGATAGTAGATATGCATCATGTTTTCCTGGTAACGTTCTTGTTAAAGATAGTGCATCAGTGCAACACTCAACTTGTGCTTCATATATTTCAAGTGAAGGTGAAGAGACGAAGCAACTACCTGGTACTTTTCCTGCTGTTGGATCTGAGAACAATGATTTATTCAAGTGTGAGGATAGTGTTACATTCACAATGACTGAGAAAGCCAAATATTATCAAGATGCTATTGGTGGAGCTGACAATTACTTTCCTGGAAGTATGAGAAATTTAAATTTAAAACCATTTGACAAATCTTTGTATAATGTCCAAACATCAATTGCCAGTAGGAAGTTGTATAATTGTGTTACAAGTGAAGGAGAGGGAAAGTTAATTGAACATAGAAGTATTGAGTCTCAACTTTCAAACGGAAGTATTGACAGATCCAATATTGAGGATGAATCCGATGTTTGTATTATTGAAGACATCAGTTACCCTGCACCTCTAAGTCGATCAGCAGAGCTTGGGAATTCTCTCAACACATTACAACCTTCTAGATGTGGTTATACTACTCATTCTTCTACGGTGGGACTTATGAGACCCAAGGCACTTGATGAGCAGTACATATTACGAGTTGCATTGCAGGACCTTTCCCAACCAAAATCAGAGGTTAGCCCACCAGATGGACTGTTGGCAGTTCCCCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAACTTCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGCAAAACAGTGTCAACCATTGCTTTAATATTAAAGGAAAGACCTCCATTGCTGAATAAATGCAACCTTGCAAAGAATAGTGAATTAGAAACTTTGAATCTGGATGCAGATGATGATCAACTTCTTGAGGGTGGTATAGTGAAGAATGAGTGTAATATGGTTCAGGATTTGTCTTGTAGAAATCCAAACAAGAACATGAATTTGTTAATGCATTTAAAGGGAAGGCCATCTGCAGGAACCCTTGTTGTTTGTCCGACTAGTGTTCTACGGCAATGGGATGAAGAGTTGCACAGTAAGGTAACTGGAAAAGCAAATCTTTCTGTGCTAGTGTACCATGGTAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGCATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTTCCTAAGCAGCCTCTAGTTGACAAAGACGATGAAGAAAAAAGAACTTATGATGATCCTGCAGTATCAAGCAAGAAAAGGAAATGCCTTTCCACTTCTAAAAATAACAAGAAGGGATTGGACACTGCAATTCTTGACTCTGTTGCTCGACCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATCAAGAACCACAGAACTCAAGTTGCGAGGGCTTGTTGGGGTCTTAGAGCGAAGCGTAGATGGTGCTTATCAGGGACTCCTATTCAGAATGCAATTGATGATCTCTATAGCTACTTCAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCTATCAGCAAAAGTCCATCAAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACCATCATGTTACGTCGCACAAAAGGCACACTTCTTGATGGGGAGCCTATCATTTCCCTGCCACCTAAATCTGTAGAGTTGAAAAAAGTGGAGTTTTCACAGGAGGAACGTGATTTCTATTCTAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAATTATGTTAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCATGCGATCATCCCCTCCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTACTCAGGAAAAGCGATTATCTCTTCTAAATTGTTTGGAAGCTTCTTTGGCCCTCTGCGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTGTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGTGAACATCTTACTGGTGATGACAGTCAGTGCCCCACTACAAACTGCAAAATTAGACTAAGCATGTCTTCAGTGTTCTCCAAAGTCACATTGAATAGTTCTTTTTCTGATCAGGCTTGTAATAATTTGCCTGGTTACTCTGGTTGTGAAGTGGATGAATCTGAGTTTTGTTCTGATAGTCATCCATATAATTCTTCAAAAATTAGGGCTGCACTTGAGGTGTTACTTTCTTTGTCTAAACCACAATGCTGTTCTCTCCAAAGCAATTCTGTGCAGAGCACTCCTGGCAAAACTACTGATGGCCTCGGGAGCTCATCTTGTGCTGACCGATTGAAATCCTCAAACGAATTCCCTGAGAATCAAAATGTGTCAGAGAGAATCTCTAATAATTCAGTTGGTGGTGAGAAAGCTATAGTGTTTTCTCAGTGGACCAGGATGCTTGATTTACTTGAAGCATGTCTTAAGAATTCTTCAATTCAGTATAGAAGACTTGATGGAACAATGTCTGTTTCTGCAAGGGATAAAGCTGTTAAAGATTTTAACAACCTCCCTGAGGTTTCAGTTATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCCTGCCATGTTCTTATGCTAGATCTTTGGTGGAATCCTACAACTGAAGATCAGGCTATAGACAGAGCGCATCGTATAGGACAGACCCGTCCTGTCACAGTCTTACGGTTAACTGTTAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCGAAAAATGGTTGCGTCTGCCTTTGGAGAGGATGGAACTGGTGGTCGCCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGA 3867 0.4044 MMADEGFGYACFLGGDGNAAGDDKLSIDLETFMSVLDEDTDPSESSPEDFSLKNISPGESGIHGSFLLQNGNSVLECDHENQGPSPQTFSFPNALAGGYMDHEGDDFCITERTEVSNCEMPAYIGTRFPDPEVNSSNVAVCGDSLKLTMWKCENDSQIKHVGYGAESERASHGSIIENIDANFDDYATYMKDIVGPSGKQENDSCTSFVDADRSSHVATSTDSSICQGSNVPNDFSDYYPSFNIYQGMDDRPALANTSDCLFNGAYPHLWENEKMTRNMKVNKMELFTDTSGGMHSIINAGISFQDTQYTFPDSRYASCFPGNVLVKDSASVQHSTCASYISSEGEETKQLPGTFPAVGSENNDLFKCEDSVTFTMTEKAKYYQDAIGGADNYFPGSMRNLNLKPFDKSLYNVQTSIASRKLYNCVTSEGEGKLIEHRSIESQLSNGSIDRSNIEDESDVCIIEDISYPAPLSRSAELGNSLNTLQPSRCGYTTHSSTVGLMRPKALDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLNKCNLAKNSELETLNLDADDDQLLEGGIVKNECNMVQDLSCRNPNKNMNLLMHLKGRPSAGTLVVCPTSVLRQWDEELHSKVTGKANLSVLVYHGSNRTKDPYELAKHDVVLTTYSIVSMEVPKQPLVDKDDEEKRTYDDPAVSSKKRKCLSTSKNNKKGLDTAILDSVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISKSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLTQEKRLSLLNCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDSQCPTTNCKIRLSMSSVFSKVTLNSSFSDQACNNLPGYSGCEVDESEFCSDSHPYNSSKIRAALEVLLSLSKPQCCSLQSNSVQSTPGKTTDGLGSSSCADRLKSSNEFPENQNVSERISNNSVGGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVSARDKAVKDFNNLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM* 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1962 1288 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1121 1283 IPR001650 -
Pvu6g1962 1288 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 469 1287 - -
Pvu6g1962 1288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 867 1287 IPR027417 -
Pvu6g1962 1288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 859 IPR027417 -
Pvu6g1962 1288 Pfam SNF2-related domain 558 936 IPR000330 GO:0005524|GO:0140658
Pvu6g1962 1288 ProSiteProfiles Zinc finger RING-type profile. 975 1014 IPR001841 -
Pvu6g1962 1288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 968 1026 IPR013083 -
Pvu6g1962 1288 ProSitePatterns Zinc finger RING-type signature. 990 999 IPR017907 -
Pvu6g1962 1288 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 553 821 IPR014001 -
Pvu6g1962 1288 Gene3D - 506 599 IPR038718 -
Pvu6g1962 1288 Pfam Zinc finger, C3HC4 type (RING finger) 975 1012 IPR018957 GO:0046872
Pvu6g1962 1288 SMART ultradead3 534 836 IPR014001 -
Pvu6g1962 1288 CDD DEXDc_SHPRH-like 538 859 - -
Pvu6g1962 1288 SMART ring_2 975 1013 IPR001841 -
Pvu6g1962 1288 CDD SF2_C_SNF 1132 1240 - -
Pvu6g1962 1288 SUPERFAMILY RING/U-box 972 1020 - -
Pvu6g1962 1288 Gene3D - 635 872 IPR038718 -
Pvu6g1962 1288 SMART helicmild6 1147 1230 IPR001650 -
Pvu6g1962 1288 Gene3D - 1030 1287 IPR027417 -
Pvu6g1962 1288 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 469 1287 - -
Pvu6g1962 1288 Pfam Helicase conserved C-terminal domain 1128 1230 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1962 Pvu-Chr6 29724873 29733017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1962 429 1287 RAD5 or RAD16-like Gene Family AT1G61140 60.455 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu6g1962 SNF2_N 7.5e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1962 - - gmx:100805307 1939.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2313 2 38940277 38947982 Pvu6g1962 6 29724873 29733017 PCT