Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1961 ATGGACAATATTATCTACACTTTGGTTTTTATATTTATTCTATCTTTGAAGGCTGATACTGTTTGTTCTAGAGAGAGACAATGGGTGAGGTCTGGGAAGAATAATATAGCTGATCTTGTGACAAACTTGCCTGGCCAACCTCCTGTAGATTTCCAGCACTACGCTGGATATGTCACAGTCAATCAAACCAATGGAAGAGCACTCTTTTACTGGTTCTTTGAGGCCATCACCAAGCCTCAACACAAACCATTGGTTCTGTGGCTTAATGGAGGACCTGGGTGTTCTTCTGTTGGATATGGAGCAACACAGGAGATTGGACCATTTTTAGTGGACACCGATGGCAAGAGCCTTATGTTTAATAACTTCTCATGGAACAAAGAGGCCAACATGTTATTCCTGGAATCTCCTGTTGGGGTTGGCTTTTCCTATTCAAATACAACCAGCGAATATGCACAATTGGGAGATGACTTCACAGCTAATGATGCTTACACTTTTCTGCACAATTGGTTCCTCAAATTTCCCTCATATAGAACAAGGACATTTTACATAGCTGGAGAAAGCTATGCAGGGAAGTATGTACCGGAGCTGGCTGAACTCATCCAAGACAGAAACAAGGATCCTTCCCTTCACATTGATCTCAAGGGAATTTTGCTGGGGAACCCTGAAACATCTGATGCTGAGGACTGGTCAGGCATGGTTGATTATGCTTGGAGCCATGCAGTGATATCTGATGAAACATACAAGACAATCAAAGCAAGCTGTGACTTCAATAGCAGTGATCCATGGAGCAATAAAGATTGCAGTGAAGGAGTGGATGAAGTTCTCAAACAGTACAATGAAATTGATATCTACAGCCTCTACACCTCAGTATGCTTCGCCAGTACAGCACGTTCAAATTATCAATCCATGCAAATGGTCATGCTTCGCTCATCTAAAATGATGCCAAGAATCATGGGTGGTTATGACCCATGTTTGGATGACTATGCTAAAACTTTTTACAATAAACCAGATGTTCAGAAGGCACTCCATGCCAGTGATGGTCACAATCTGAGGAATTGGAGTATTTGCAATGACAACATATTCAAGGGCTGGAAACAATCAAAGACTTCTGTTATCCCAATCTACAATAAGCTGATTTCAGCAGGACTAAGGATTTGGATTTACAGTGGAGACACCGATGGTAGGGTGCCAGTGTTGTCGACAAGATACAGCTTAAGTATTCTAGATTTGCCTATCACTAAGAAATGGAGGCCTTGGTACCATGAAAAGGAGGTAAGTGGGTGGTATCAGGAATACGAAGGGCTAACGTTTGCGACATTTCGGGGAGCTGGGCATGCAGTGCCATGTTTCAAACCAAGCAACTCCCTGGCATTCTTCTCCTCCTTTCTTAATGCATATTCACCACCCTCTACTAAATAA 1419 0.4242 MDNIIYTLVFIFILSLKADTVCSRERQWVRSGKNNIADLVTNLPGQPPVDFQHYAGYVTVNQTNGRALFYWFFEAITKPQHKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGKSLMFNNFSWNKEANMLFLESPVGVGFSYSNTTSEYAQLGDDFTANDAYTFLHNWFLKFPSYRTRTFYIAGESYAGKYVPELAELIQDRNKDPSLHIDLKGILLGNPETSDAEDWSGMVDYAWSHAVISDETYKTIKASCDFNSSDPWSNKDCSEGVDEVLKQYNEIDIYSLYTSVCFASTARSNYQSMQMVMLRSSKMMPRIMGGYDPCLDDYAKTFYNKPDVQKALHASDGHNLRNWSICNDNIFKGWKQSKTSVIPIYNKLISAGLRIWIYSGDTDGRVPVLSTRYSLSILDLPITKKWRPWYHEKEVSGWYQEYEGLTFATFRGAGHAVPCFKPSNSLAFFSSFLNAYSPPSTK* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1961 472 Gene3D - 371 465 - -
Pvu6g1961 472 Gene3D alpha/beta hydrolase 35 293 IPR029058 -
Pvu6g1961 472 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 19 465 IPR001563 GO:0004185|GO:0006508
Pvu6g1961 472 Pfam Serine carboxypeptidase 44 464 IPR001563 GO:0004185|GO:0006508
Pvu6g1961 472 ProSitePatterns Serine carboxypeptidases, serine active site. 183 190 IPR018202 GO:0004185
Pvu6g1961 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185|GO:0006508
Pvu6g1961 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185|GO:0006508
Pvu6g1961 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 194 IPR001563 GO:0004185|GO:0006508
Pvu6g1961 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 435 448 IPR001563 GO:0004185|GO:0006508
Pvu6g1961 472 SUPERFAMILY alpha/beta-Hydrolases 37 466 IPR029058 -
Pvu6g1961 472 Gene3D - 324 362 - -
Pvu6g1961 472 PANTHER CARBOXYPEPTIDASE 19 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1961 Pvu-Chr6 29715243 29718979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1961 329 465 Calmodulin-binding Proteins AT2G22960 33.333 3.03e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1961 K16297 - gmx:100819700 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2315 2 38968965 38973066 Pvu6g1961 6 29715243 29718979 PCT