Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1959 ATGAATAGCATGGGTTCATCTTCAGAATATCACACTCATCAGCACCCTCATCTTCCTCCGGGGTTTCGGTTCCACCCCACAGATGAGGAACTAGTGGTTCACTACCTCAAGAGAAAAGCAGACTCTGTTCCTCTTCCTGTTGCCATCATCGCCGAGGTTGATCTCTACAAGTTCGATCCGTGGGAACTCCCAAGTAAAGCAACGTTTGGCGAGCAAGAGTGGTACTTTTTCAGCCCAAGAGACAGAAAATACCCGAATGGGGCAAGGCCTAACAGGGCTGCTTCTTCTGGGTATTGGAAAGCTACCGGAACTGACAGGCCGATTCTTGCATCTCATGGCCACCACAAAGTAGGAGTCAAGAAAGCACTTGTTTTCTACGGTGGGAAGCCTCCAAAAGGGGTTAAAACCAATTGGATCATGCACGAGTACAGGCTTATTAGCACTTCCTCGAATTCTACCTCAAAACCACCTTCTCTGCCTGCAGACCATGCACGTAGTACCAAGAAAAACTCCTTGAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAACAACAGCACCATCATGCCAAGGTTTCCTTTGATGGAGCAGAACAAGGAGCTTTCTTCGGAGAGTACTATGGTACCAATGATGTCAACTTTGTCAATGGCCAATAATAACACAACTCAGAACTCCAAAGCCGGGACTTCGACAAGCGCAAGTTATGGACCCCTGGGACTAGAAAATGATGACAACTTGTTTGATGGAATCTTAGGAGTTGACCATAGCATGCAGCAAGATGTTTCTGATTCCCACCAAGTCTCTTCAAAGGGAATCTACCCTGTGAAACGAGCACTCTCGTCACAGTTTTGGAATGACACAGGGTCATCTTCTTCTAGCAGGAGATTCCATTGTGATCTCAATGCAGGAAGCAACACTGTTGAGGAAGACAATTCCTTCGTTTCAATGCTTAGCCAACTTCCACAGAACACAGGGTTTCACCCAAATGCACTTCTTGGCCCAGTTAGTAATGATGTATTGAGGCAACAGTTTCAACTTCCAAGCATGAACTGGAACGTTTAG 1068 0.4607 MNSMGSSSEYHTHQHPHLPPGFRFHPTDEELVVHYLKRKADSVPLPVAIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAASSGYWKATGTDRPILASHGHHKVGVKKALVFYGGKPPKGVKTNWIMHEYRLISTSSNSTSKPPSLPADHARSTKKNSLRLDDWVLCRIYKKNNSTIMPRFPLMEQNKELSSESTMVPMMSTLSMANNNTTQNSKAGTSTSASYGPLGLENDDNLFDGILGVDHSMQQDVSDSHQVSSKGIYPVKRALSSQFWNDTGSSSSSRRFHCDLNAGSNTVEEDNSFVSMLSQLPQNTGFHPNALLGPVSNDVLRQQFQLPSMNWNV* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1959 355 PANTHER NAC TRANSCRIPTION FACTOR 56-LIKE 1 325 - -
Pvu6g1959 355 MobiDBLite consensus disorder prediction 1 21 - -
Pvu6g1959 355 MobiDBLite consensus disorder prediction 148 167 - -
Pvu6g1959 355 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Pvu6g1959 355 ProSiteProfiles NAC domain profile. 18 185 IPR003441 GO:0003677|GO:0006355
Pvu6g1959 355 SUPERFAMILY NAC domain 11 185 IPR036093 GO:0003677|GO:0006355
Pvu6g1959 355 Gene3D NAC domain 27 190 IPR036093 GO:0003677|GO:0006355
Pvu6g1959 355 PANTHER NAC TRANSCRIPTION FACTOR 56 1 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1959 Pvu-Chr6 29705815 29707591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1959 1 354 NAC Transcription Factor Family AT1G61110 55.000 2.08e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu6g1959 NAM 2.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1959 - - gmx:100806369 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2316 2 38979449 38981396 Pvu6g1959 6 29705815 29707591 PCT