Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1947 ATGCAGATTGCAGAGTATACCAGAATCATTATGACTTGTGGCTGCTTTGGAGCCAAATCTGCTAAGAAAAGACGCTCTTCTAATGTTAATGGAGAAATTGATGGTTATCCCCTTGTTAATGTTAGGCAATTTTCTGATAAAGAACTGAGATTGGCAACTGATAATTATCACTCAAACAATAAGATAGGACGAGGAGGTTTTGGAACCGTTTACCAGGGAACCTTAAGAGATGGAAGACGTATAGCAGTGAAGACTCTCTCAAATTGGTCAAAGCAGGGTGTTCGTGAGTTTTTGACTGAAATCAAAACTTTGTCAAATGTTAAACATGCAAACCTTGTTGAATTGATTGGATTCTGCATCCAAGGACCTAGTCGTACATTAGTCTACGAGTATGTGGAAAATGGAAGCCTTAATAGTGCACTACTTGGCACAAGGAATGAAAAGATTAAACTAGACTGGAGAAAAAGATCTGGTATCTGTTTAGGTACTGCTAAGGGTCTTGCCTTTCTGCATGAAGAACTTTCACCACCAATTGTGCATAGAGACATCAAAGCTAGTAATGTACTACTTGACAAAGATTTCAATCCCAAAATAGGTGATTTTGGGTTGGCTAAACTATTTCCAGATGGTATCACTCACGTTAGCACAAGAATTGCTGGAACAGCTGGTTACTTAGCACCGGAATATGCAATAGGTGGCCAGTTAACGAAGAAAGCTGATATATACAGCTTTGGGGTTCTCGTGCTTGAAATAGTTAGTGGCAGAAGCAGTGCCAGGAGAACAAACGGAGGAGGATCACACAAATTTCTCTTGGAATGGGCCTGGCAACTTTATGAAGAAGGAAAATTGTTGGAGTTTGTGGATCCAGAGATGGAAGAGTTTCCTGAGGAAGAGGTAATGAGATACATGAAGGTTGCACTTTTCTGTACACAGTCAGCAGCAAGTAGAAGGCCTTTGATGATACAAGTTGTTAGTATGCTATCAAAGACAATCCAACTCAATGAGAAAGAACTTACAGCACCAGGATTATTCACAGATGAAGGAGAATCTTCTCGAAAACACCCTCTTCCTTTTATTACCTCTACTCATGTTGCTATTACTCAGGTCACCCCAAGGTGA 1119 0.4021 MQIAEYTRIIMTCGCFGAKSAKKRRSSNVNGEIDGYPLVNVRQFSDKELRLATDNYHSNNKIGRGGFGTVYQGTLRDGRRIAVKTLSNWSKQGVREFLTEIKTLSNVKHANLVELIGFCIQGPSRTLVYEYVENGSLNSALLGTRNEKIKLDWRKRSGICLGTAKGLAFLHEELSPPIVHRDIKASNVLLDKDFNPKIGDFGLAKLFPDGITHVSTRIAGTAGYLAPEYAIGGQLTKKADIYSFGVLVLEIVSGRSSARRTNGGGSHKFLLEWAWQLYEEGKLLEFVDPEMEEFPEEEVMRYMKVALFCTQSAASRRPLMIQVVSMLSKTIQLNEKELTAPGLFTDEGESSRKHPLPFITSTHVAITQVTPR* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1947 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Pvu6g1947 372 PIRSF ILK 17 338 - -
Pvu6g1947 372 SUPERFAMILY Protein kinase-like (PK-like) 32 327 IPR011009 -
Pvu6g1947 372 PANTHER - 8 348 - -
Pvu6g1947 372 Pfam Protein kinase domain 56 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1947 372 Gene3D Phosphorylase Kinase; domain 1 29 131 - -
Pvu6g1947 372 ProSitePatterns Protein kinases ATP-binding region signature. 62 84 IPR017441 GO:0005524
Pvu6g1947 372 ProSiteProfiles Protein kinase domain profile. 56 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1947 372 Gene3D Transferase(Phosphotransferase) domain 1 132 340 - -
Pvu6g1947 372 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 348 - -
Pvu6g1947 372 CDD STKc_IRAK 62 329 - -
Pvu6g1947 372 SMART serkin_6 56 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1947 Pvu-Chr6 29607736 29611148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1947 44 346 Receptor kinase-like Gene Family AT1G56120 52.145 5.30e-102 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu6g1947 Pkinase 5.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1947 - - gmx:100809588 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2342 2 39207977 39212809 Pvu6g1947 6 29607736 29611148 PCT