Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1941 ATGTACATAGCTTCCATGGGAAGGTCTTTCAAGGACTCTTTGAAACTGCTTGAAGCTGATATTCACCATGCCAATACCCTGGCATCAGATTTTCCAAGGGAATATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTATGGCAGCACACCTATTTATCTTTTTGGTGCAATGGACAGATTGCAATCTTGCCGGAGCCCTAGGACTGTTAAGAATCCTAATATACAAGGTGTATGTAGATGGGACAACTACCATGTCTACCTATGAAAGGAAAGCAAGTATTAGAGAATTCTATGCGGTCATATATCCCTCTTTGTTGCAACTGCAAAAAGGTGTAACAGATACAGAGGATAAAAAACAGAAGGCTGTATGCTCGGAGAGGTATCGGAAAAGAGACGAAGAGGAGCACAGACAGCTTTCGGTTATAGATATTGAAAGGGAAGAAGAATGTGGAATATGCATGGAAATGAACAGTAAGATTGTGTTACCCGACTGCAACCATGTTATGTGCCTGAAATGTTACCACGAATGGAGAACAAGATCACAGTCATGCCCCTTTTGCCGCGACAGTCTCAAGAGAGTAAACTCAGGTGATCTGTGGGTGTTCACTGATGGTAGGGATGTTGTAGACATGACAACAGTGACAAGGGAGAATCTTAAAAGACTTTTCATGTACATAGATAAGTTGCCTTTGATCATTCCAGACTCTCTTTTTGACCCTTATGACTCTCATCTAAGATGA 744 0.4167 MYIASMGRSFKDSLKLLEADIHHANTLASDFPREYDGACLQMRMSYSMAAHLFIFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTYERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCSERYRKRDEEEHRQLSVIDIEREEECGICMEMNSKIVLPDCNHVMCLKCYHEWRTRSQSCPFCRDSLKRVNSGDLWVFTDGRDVVDMTTVTRENLKRLFMYIDKLPLIIPDSLFDPYDSHLR* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1941 247 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 4 247 - -
Pvu6g1941 247 SMART ring_2 151 188 IPR001841 -
Pvu6g1941 247 PANTHER RING FINGER PROTEIN 41, 151 4 247 - -
Pvu6g1941 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Pvu6g1941 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Pvu6g1941 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Pvu6g1941 247 SUPERFAMILY RING/U-box 143 194 - -
Pvu6g1941 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 216 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1941 Pvu-Chr6 29552478 29557537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1941 151 206 C3H Transcription Factor Family AT5G01960 39.286 1.50e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1941 K25840 - gmx:100789769 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2348 2 39283696 39288086 Pvu6g1941 6 29552478 29557537 PCT