Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1928 ATGGCACTTGAGCACTACATTTCCGGGGATTTGAAAACCATCCAAGATGCTGTGACCGAGACAGAAAACTCTGATGGTTGTTTTGATTGCAACATCTGCCTAGACTTTGCACATGAACCAGTGGTGACCCTGTGTGGCCACCTCTACTGCTGGCCATGCATCTACAAGTGGCTAAGTGTCCAAAGTGATACTCTTACAACTAGTGAGCGCCCTCAGTGCCCCGTTTGCAAGGCTGTTATATCCAACAGCACAATGGTTCCACTCTACGCCCGTGGCCATGCCACAGCTGAAGGGAAAACATCTTCTTGTGATGTTTTGATACCTCCAAGACCACCTGCTTCATGTGCTCAAGAACTTGTGGCAACATCATCTCAAAGGGGTCAGCAGCGCCTTCCATATCGTAATCCTTACCAGGGTCACTACTTCAGCTCTCGTCCGTACCAAGAAGCGGACTCCACTTCACGAATGCTGAATCTTGGATCGTACCACCACCCTGTGACTGGGATGTTTGGGGAGATGGTTTATTCCAGAGTGTTTGGCAACCCAGAAAATTTGTATGCATACCCCAATTCTTATCAGCTGATGGGAAGTTCTACCCCTAGGTTGAGAAGGCAAGAGATGCAGGCACACAAATCTTTGAACAGAATCACTATTTTTCTCTTTTGCTGCTTCCTTATTTGTCTTCTTGTCTTCTAA 696 0.4713 MALEHYISGDLKTIQDAVTETENSDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLSVQSDTLTTSERPQCPVCKAVISNSTMVPLYARGHATAEGKTSSCDVLIPPRPPASCAQELVATSSQRGQQRLPYRNPYQGHYFSSRPYQEADSTSRMLNLGSYHHPVTGMFGEMVYSRVFGNPENLYAYPNSYQLMGSSTPRLRRQEMQAHKSLNRITIFLFCCFLICLLVF* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1928 231 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Pvu6g1928 231 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Pvu6g1928 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 231 - -
Pvu6g1928 231 SUPERFAMILY RING/U-box 25 90 - -
Pvu6g1928 231 CDD RING-HC_AtRMA_like 28 78 - -
Pvu6g1928 231 SMART ring_2 30 76 IPR001841 -
Pvu6g1928 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 231 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pvu6g1928 231 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Pvu6g1928 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 132 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1928 Pvu-Chr6 29477128 29479236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1928 23 217 C3H Transcription Factor Family AT4G27470 40.488 4.77e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1928 K10666 - gmx:100816864 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1928 6 29477128 29479236 Pvu6g1928 6 29477128 29479236 ECH
Pvu2g2356 2 39343359 39345694 Pvu6g1928 6 29477128 29479236 PCT