Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1915 ATGGAGAACAACCCTAGTTCATCAGTTGATAGAAAATTCACTGAGAGGAATAGAAGAAATCAAATGAAAGCTCTCTTCCGCAAGCTCAACTCACTTGTGCCTCATCAAAGAACAAAGGCGGTTTCACTCCCGGATCAGCTGGGAGAAGCAACAAACTACATAAAGAAATTACAGATGAATATGGAGAAAATGAAGAAGAAGAAGAGCATGCTACTAGGAATAATAGAAGGGCCAAATGTGAGAATGAATGAAGGAGGAGAGAGCTTAGGGTTAAAATCTCCACGGATTGAGATCCAACAAATGGGATCAGCCTTAGAGGTTGTTCTAATAACTGGGTTGGATTCTCAGTTCATGTTCGGTGAAACCATTCGTGTTCTTCATGAAGAAGGAGTACATGTTGTTAACGCCAGTTATAATGTTATCGAAGATGAAGTTTTCCATTCAATACACTGTCAGGAGGAGAAATCTGCCAACAGAGCTGCCAGAATATCTGAGAGGCTAAAGAACTTCATCTATGATTCTGCCTACATACCGTGA 537 0.406 MENNPSSSVDRKFTERNRRNQMKALFRKLNSLVPHQRTKAVSLPDQLGEATNYIKKLQMNMEKMKKKKSMLLGIIEGPNVRMNEGGESLGLKSPRIEIQQMGSALEVVLITGLDSQFMFGETIRVLHEEGVHVVNASYNVIEDEVFHSIHCQEEKSANRAARISERLKNFIYDSAYIP* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1915 178 Gene3D - 3 83 IPR036638 GO:0046983
Pvu6g1915 178 Coils Coil 47 67 - -
Pvu6g1915 178 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 57 IPR011598 GO:0046983
Pvu6g1915 178 PANTHER TRANSCRIPTION FACTOR BHLH162 1 172 - -
Pvu6g1915 178 Pfam Helix-loop-helix DNA-binding domain 14 58 IPR011598 GO:0046983
Pvu6g1915 178 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 81 IPR036638 GO:0046983
Pvu6g1915 178 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 172 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1915 Pvu-Chr6 29365223 29366725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1915 6 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 44.318 8.27e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu6g1915 HLH 4.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1915 - - gmx:100784418 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2361 2 39479926 39481216 Pvu6g1915 6 29365223 29366725 PCT