Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1903 ATGTCTCTCCCTGATTCTCCTGTGCCCGATGATACCGAAACCGATCCATCCGAAGACGAAGAGCAAGTCGAAGAAGAAACAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGCTGAGGAAGAAGTAGAAGAGGAAGTAGAAGAAGAAGAGGGGGAGGAGGAAGAGGTTGAGGAAGTAGATGAGGAAGAAGAGGTCGAGGAAGTAGAGGAGGAAGAGGAAGAAGTAGAGGAAGTGGAGGTAGAAGAAGAAGAAGTTGAGGTAGATGAAGAGGAAGAGGTAGAACAAGAAGTAAAAGGAGAGGAAGAAGTCAAAGAGGAGGAAGGAGAAGAAGAAACATTGGAGGATAAGAAAGAAAGGCAAGAACAGAAACAAAAAGAAGCAGTGGAGGAGGAGAAGGAAGGTCAACCACAACAACAAGAAAAAGCAGTGGAGGAGCAGAAGAAAGAGCAACAACGACAAGAAGAAGCAGTGGAGGAGAAGGAGAAAGAGCAACAGCAGCAACAAAACGAAGCAGTAGAGGAGAAGAAGAAAGCGCAACAACAGCAACACGAAAAAACTGTGGAGGAGAAGAAGAAAGAGCAACAATTGCAACAGGAAGAAGCAATGGAGAAGGAGGGACGACAAAAAGAAGAAGTGGGGGAGGACAAGGGTCGAAAAGATTTGAGCCTACATATGGAGTCTAAGGAGCAAGACAAAAACTTGGGGCCAGATTCTTCTGTGGCTGAAAACTCTGATGTAATTCCATCATCTAGTGTGCATTGCATGGAAGAGAATGATAACATGCTCAAAATATCTGTTCCTTCATGTGAGATACTGACATCGAAAAAGGAAGAGTTTCACCAGAAATATGACATTTCAAGTCATTCGAAATCAAGAGAAAATCTGACTTCTGTTGAAAATAGCAGAAGTAAAGGATTAGAAGTTGACGGTGAAAATGCTGGATCCCTTCTCCAGAAGGAAACACACAGGGGATACAGTGAGTTAGGTTGCAATAGCAAAGCTAATTTATGTGATGATAATGATATTGATTCTGGGGCCAGGGCTTCCAAACCATCTAGTGATACTGGACAAGATATGGTCATTGGCCTCTTTCCCAAAGATTGTCTTGTTGAGGATGCTAATGGTGGTCAGAATTCTAGGAACAATATCACACAGTTAGAGATGGAGTCAAGGGATGATATGAAGCAAATGCTGACAAGGACTAGAAGTCTGTCTCCCAGTGCTGAGAATAAAAACAGAAACAAACGACCAAAAATTATATGTGATTTTTTTGCTAAGGGATGGTGTATCAGAGGTAGTTCTTGTAGCTTTCTTCATATTAAAGATAGTGTGGATAAGACAGATCAGGAGGTTGAAGCTGACTTAGCTACTGTTCATCAGAAGAGAAAATTGAAAGTGGAAGAAGGTGTTAGGGAAAATGTTCAGAGAATAAGGATGAATGAGCAAGAAGAAACCCCTAGTTGGCATCCATCTCAAGAAAAACAGAACTTTAAGCTGAGGGACAACTTGTTTCCAGAGAATAGATTTGCATTTAGTTCAACAAGCAATTATTTCAGCCCGAAGCAGGATGGAATGGCCACTCTTCGGAACCAACATATGTACAAAGGATATGCTTCCACTTTTTTGAGCCATTCACCAAATTCAAGGCAGGAAGATTTTCCTCTAGTTAGTTCGTCCAGGGCTCCATCTTATCCCACTGGATATAAATCAAAAATCTGTTCTTATGATTGGGAACCTTCTGTGCCCTTCCGGCCATCCTTTTTTATTACTTCCATGAATGTATCATCTCCTGGAGATCTTTATGACCCTCTTCGAGATAGCATTGAGATACCTAATATAGGGGATGGGTCTTTGAAGGCTTCCCTTTTAATTCAAGGATCTAACAGACAGACTTCAACACAGGCTCCGATATATGGTGATTCTGCTGTAGTTGGGAAACACATGTCCAGTCTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAAAGTTTATGAAACTGAGACAAACAAAAATTCTGTTCCTCATGAAAAAGATTATCTTCCTACTGAAACAGAGATAACATCGGGAACTTATGTAAACTATCAAAATGGTAAAATTGGCACAGGACAAAATACCTTTGGTGTTGCAGATAATACAAAAAAAGAGGGAGACATGACTGAGCATGATACTAGACATCACAGCGAAGGATCAGGGCACAAAAAAAAGAGAGGAGACAGGGATAAGAAAAATCATGAAATGGATGTTGACTTTCCTATGGATGGCAGCATGCAGAAGGAAGTGAAGGCACTAAAAATGTTACGTGCAGCTCTTGTTGATCATGTAAAAGAGTTGTTAAAACCAGTTTGGCATGAGGGTCGTCTCAGCAAGGATGAATATATTATGATAGTCAGAAAATCTGTTGACAAGGTTGTTAGCAGCATAGAGCCCCATCAGATTCCGACCATAGATACTGCCAAGCAATATGTTTCTTCAAGTCGGGTGAAAATTGCAAAGCTGGTCAATGGATATGTCAACAAATATGGCAAATCTTGA 2535 0.4103 MSLPDSPVPDDTETDPSEDEEQVEEETEEEEEEEEEEAEEEVEEEVEEEEGEEEEVEEVDEEEEVEEVEEEEEEVEEVEVEEEEVEVDEEEEVEQEVKGEEEVKEEEGEEETLEDKKERQEQKQKEAVEEEKEGQPQQQEKAVEEQKKEQQRQEEAVEEKEKEQQQQQNEAVEEKKKAQQQQHEKTVEEKKKEQQLQQEEAMEKEGRQKEEVGEDKGRKDLSLHMESKEQDKNLGPDSSVAENSDVIPSSSVHCMEENDNMLKISVPSCEILTSKKEEFHQKYDISSHSKSRENLTSVENSRSKGLEVDGENAGSLLQKETHRGYSELGCNSKANLCDDNDIDSGARASKPSSDTGQDMVIGLFPKDCLVEDANGGQNSRNNITQLEMESRDDMKQMLTRTRSLSPSAENKNRNKRPKIICDFFAKGWCIRGSSCSFLHIKDSVDKTDQEVEADLATVHQKRKLKVEEGVRENVQRIRMNEQEETPSWHPSQEKQNFKLRDNLFPENRFAFSSTSNYFSPKQDGMATLRNQHMYKGYASTFLSHSPNSRQEDFPLVSSSRAPSYPTGYKSKICSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIQGSNRQTSTQAPIYGDSAVVGKHMSSLNDDKSSVSSHNKVYETETNKNSVPHEKDYLPTETEITSGTYVNYQNGKIGTGQNTFGVADNTKKEGDMTEHDTRHHSEGSGHKKKRGDRDKKNHEMDVDFPMDGSMQKEVKALKMLRAALVDHVKELLKPVWHEGRLSKDEYIMIVRKSVDKVVSSIEPHQIPTIDTAKQYVSSSRVKIAKLVNGYVNKYGKS* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1903 844 Coils Coil 17 133 - -
Pvu6g1903 844 SMART c3hfinal6 416 441 IPR000571 GO:0046872
Pvu6g1903 844 Gene3D - 406 490 - -
Pvu6g1903 844 MobiDBLite consensus disorder prediction 701 752 - -
Pvu6g1903 844 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 203 844 - -
Pvu6g1903 844 MobiDBLite consensus disorder prediction 236 253 - -
Pvu6g1903 844 SUPERFAMILY CCCH zinc finger 415 439 IPR036855 GO:0046872
Pvu6g1903 844 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 420 439 IPR000571 GO:0046872
Pvu6g1903 844 Coils Coil 140 207 - -
Pvu6g1903 844 MobiDBLite consensus disorder prediction 714 728 - -
Pvu6g1903 844 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 203 844 - -
Pvu6g1903 844 MobiDBLite consensus disorder prediction 283 314 - -
Pvu6g1903 844 ProSiteProfiles Zinc finger C3H1-type profile. 415 442 IPR000571 GO:0046872
Pvu6g1903 844 MobiDBLite consensus disorder prediction 11 112 - -
Pvu6g1903 844 MobiDBLite consensus disorder prediction 113 235 - -
Pvu6g1903 844 MobiDBLite consensus disorder prediction 1 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1903 Pvu-Chr6 29247794 29262392 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu6g1903 zf-CCCH 7.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1903 - - pvu:PHAVU_006G183400g 1303.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1903 6 29247794 29262392 Pvu6g1903 6 29247794 29262392 ECH