Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1890 ATGGGGATGGACTACTATGGGATTTTGGAGGTTGACAATAATGCCTCAGATGAAGAATTGAAGAAAGCTTACAGAAAGCTTGCAATGAAATGGCACCCTGATAAGAATCCAACCAATAAAAAAGAGGCTGAGATTAGATTCAAACAGATATCTGAAGCCTACGAGGTTCTAAGTGATCCCCAGAAGAGAGAAATTTATGATAGGTATGGAGAAGGTGGCCTTAAAGGTGGAATGCCAACACCGGATGAAGGTACAGCTTCCTTCTTCCGAACTGGGCATGGCCCAGCACCATTTAGGTTCAATCCCAGAAATGCAAACAACATTTTTGCGGAAGTGTTTGGGAGTTCACACCCATTTGGAGGAATGGGAATGGGGTTTGACTGTGGTGGCAGAGGCAGAGGCAGAGGCATGGGCATGAGGGGAGGATCGTGGGTATCAAGGTCGTTTGGTGGAATGTTTGGCAATGACATGTTCAGAGAGGGCAGACCTATGAATGAAGGTCCACGCCGCAAGGCTCCTCCCATCGAAAATACATTGCTTTGCAGCCTTGAGGAGCTCTACAAGGGGAGTACCAGAAAGATGAAAATCTCAAGGGAAATTGTACATGCAAGCGGGACAGTTTTTCCTGTGGAGGAAATATTGAACATTGAAATCCAACCGGGCTGGAAGAAGGGAACTAAAATCACTTTCCCAGAGAAAGGAAATGAGCAGCCAAATGTCATTGCAGCTGATATTGTGTTTATTATTGATGAGAAACCTCACGGCATATTTACAAGAGTTGGTAATGATTTGGTTGTGACACAAAAGATATCACTTACAGAAGCTGAAGCTCAACAAGGCTACACCATCCAACTTACAACTCTAGATGGCAGGGGCCTGAACATCGCCATAAACAACGCCACTGATCCAGATTACGAAGAAGTCCTCACCGGGGAAGGCATGCCAATTTCCAAAGATCCTTCGAAGAGGGGTAACCTTAGGATCAAATTCAACATCGAAATCCCAGACATAGTTGGTGCCTGA 1023 0.4516 MGMDYYGILEVDNNASDEELKKAYRKLAMKWHPDKNPTNKKEAEIRFKQISEAYEVLSDPQKREIYDRYGEGGLKGGMPTPDEGTASFFRTGHGPAPFRFNPRNANNIFAEVFGSSHPFGGMGMGFDCGGRGRGRGMGMRGGSWVSRSFGGMFGNDMFREGRPMNEGPRRKAPPIENTLLCSLEELYKGSTRKMKISREIVHASGTVFPVEEILNIEIQPGWKKGTKITFPEKGNEQPNVIAADIVFIIDEKPHGIFTRVGNDLVVTQKISLTEAEAQQGYTIQLTTLDGRGLNIAINNATDPDYEEVLTGEGMPISKDPSKRGNLRIKFNIEIPDIVGA* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1890 340 SUPERFAMILY Chaperone J-domain 3 99 IPR036869 -
Pvu6g1890 340 Gene3D - 254 336 - -
Pvu6g1890 340 CDD DnaJ 4 59 IPR001623 -
Pvu6g1890 340 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Pvu6g1890 340 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 336 - -
Pvu6g1890 340 CDD DnaJ_C 173 336 - -
Pvu6g1890 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 169 265 IPR008971 GO:0006457|GO:0051082
Pvu6g1890 340 Gene3D DnaJ domain 2 123 IPR036869 -
Pvu6g1890 340 PRINTS DnaJ domain signature 6 24 IPR001623 -
Pvu6g1890 340 PRINTS DnaJ domain signature 24 39 IPR001623 -
Pvu6g1890 340 PRINTS DnaJ domain signature 42 62 IPR001623 -
Pvu6g1890 340 PRINTS DnaJ domain signature 62 81 IPR001623 -
Pvu6g1890 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 257 337 IPR008971 GO:0006457|GO:0051082
Pvu6g1890 340 Pfam DnaJ domain 4 67 IPR001623 -
Pvu6g1890 340 SMART dnaj_3 3 62 IPR001623 -
Pvu6g1890 340 Gene3D - 174 252 - -
Pvu6g1890 340 Pfam DnaJ C terminal domain 176 335 IPR002939 -
Pvu6g1890 340 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 336 - -
Pvu6g1890 340 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1890 Pvu-Chr6 29147203 29150526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1890 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 1.67e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1890 K09510 - gmx:100794650 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1890 6 29147203 29150526 Pvu6g1890 6 29147203 29150526 ECH