Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1889 ATGGAGGCTGAGGCAGAGGCAGAGAACAACGAGGTCAAGAGGGAAGAAAACAGCAATGACAACAACAATAACAATGAAAGTAACAGCAAATTTGGAAATTCGAGTGAGGGTCAGAGCAAGCCAAAGCGCCAGATGAAGACGCCGTTTCAGCTTGAAACGCTTGAGAAAGCTTATGCTGTGGAGAATTACCCGTCCGAGATGATGAGGGCAGAGTTGTCTGAGAAGTTGGGTTTGTCCGATCGGCAGTTGCAGATGTGGTTCTGTCACCGGCGGTTGAAGGACAAGAAGGAGTTGCCGTCGAAAAAGCCGCGTAAGGCGGCGGCTTTACCTGATTCTCCGGTTGAGGAGCCCAAGCTGGCTTCTGAAGTGGGTCCTGAATACGGATCCGGGTCCGGTTCAGGCTCCAGTCCGTTTACCCGTTCGGAGTTGAGGAATGTGGTGCCTCGGGGGTACTATGAGTCGCCACAGACTATAATGGAGCTTAGAGCAATTGCTTGTGTGGAGGCTCAGTTGGGGGAGCCTTTGAGGGAAGATGGACCTATTCTTGGAGTGGAGTTTGATCCGTTGCCACCAGATGCATTTGGGGCACCCTTAGCTGTTACAGATCCTCAAAAGCGGCCTAGTCTTGCCTATGAAAATAAAATGTACGAAAGACATGATGTTAGGACAAATAAGGCAATAACAAGGACATTCCATGAATATCCCTTTCTTCCAAGCCAGTCTGGCATTAGATCTGATGTTTTTGGACAAATAAACCTCCCCCATTTACATGAACCAATGGAGGGTCCGGCAAGAACTCCTTTTCCCCTTGGAAATGAACAACAACCTAGAATTCATGCTCCCCAAAGTCATTCTTCTCGTGTACGTGTTTTGTCTCAACCACAGGACAAACAAGTGATTCCCTATCCATCTCCCCCTCAAGAAAATGATATTGTACCCAAAAGGGAACCTCACATAAACACAACTAATACTGTTATGAACTCCCACTATACTACTGATCACCCAATTGTTGGACAAGAAATTCCATATGCTTTACCTGGTGGGCAAGTATCTCATAATGATGCAGTATTGAGGATGGAGAGGAAACGGAAGATTGATGAAGCCAGAGTTGCGAAGGAAGTTGAAGCCTACGAAATGAGGATGCGGAAAGAGCTTGAGAAACAAGATAACCTCAAACGAAAGAGTGAAGAGAGAATGAAGAAGGAAATGGAAAGGCAAGATCGTGAGAGAAGGAAGGAAGAAGAGAGGCTGTTGCGTGAGAAACAGCGAGAAGAGGAAAGATTGAAACGTGAGCAAAGGCGGGAACTGGAGCGAAGGGAGAAATTTTTGTTGAGAGAACATTTGAGAGCTGAGAAAAGGAGGCAAAAAGAAGAGATCCGCAAAGAGAAAGAGGAAGAAAGGAGGAAGGCTGCACTTGAGAAGGCAAATGCTCGGAGAATAGCTAAAGAATCTATGGAGCTTATTGAGGATGAACAACTGGAATTGATGGAGTTGGCTGCTGCAAGCAAGGGGCTTTCCTCTATTATTCATATTGATCTTGATACTTTGCAAAACCTTGAATCATTTAGGGATTCATTGTGTGTATTTCCACCCAAGAGTGTAAAGCTGAGAAAACCATTTGCTATCCAACCTTGGAGCAACTCAGAACAGAATGTTGGCAACCTTCTCATGGTTTGGAGGTTCTTGATTACTTTTGCAGATGTTCTTGATTTATGGCCTTTTACTCTTGATGAGTTTGTACAGGCATTTCATGACTATGATTCTAGATTGCTGGGGGAGATACATGTTGCTCTTCTCAAGGTGATAATAAAGGACATTGAAGATGTTGCAAGAACACCTTCTACAGGATTGGGGATGAATCAGAACGGAGCTGCTAATCCTGGAGGTGGCCATCCAGAGATTGTGGAAGGAGCATATGCATGGGGTTTTGACATACGAAATTGGCAGAAGAACTTGAATCAGTTGACATGGCCAGAAATTTTCCGACAGTTAGCACTCTCTGCAGGATTAGGACCGCATCTGAAGAAAAGAAGTATTGCATGGTCATACACAATTGATAAAGATGAGGGGAAAAGCGGTGTAGATATCATTTCTACACTTCGTAATGGTTCAGCAGCTGAAAGTGCTGTGGCCAAAATGCAAGAGAGAGGTCTGTTGGCTCCCCGAAGATCAAGGCACCGGTTAACTCCTGGAACAGTTAAATTTGCAGCTTTTCATGTTCTCTCACTGGAGGGTAGTAAGGGTTTGACAGTACTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGGGACCTAACAACCAGCAAGACACCTGAAGCATCGATATCTGTTGCTTTGACAAGAGACACTAAATTGTTTGAAAGAATAGCTCCATCAACATATTGTGTACGAGATGCATTCAGAAAGGATCCTGCTGATGCTGACTCCATTCTTACAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTTGCTGGTGAAGACGCCGATGATGTTGAAAGAGAAGAGGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGATGAGGATTTAGTGAATCCTTCTAGTGCAAACCAAAATTCTGAACAGTATGAGGACACAAACATTTGCTCATCAAATGGAAAAGAAAATTTGGATCACAACATAGATCTTCTTCGAAATGAGTTTGATACAGATCTACCCTGTTTTCCTAAGAATGGTTCCACGGATGCTGATTGTCCCAGTTCTGTCACCAGATCTGTTACTCGTGGAGATTTAAATGCTGGCAACATTGATCAAGATAATATGGAAATTGATGAAAGCATATCTGGAGAGTCCTGGATTCTTGGGCTTGCAGAAGGAGAATATTCTGTTCTCAGCGTAGAGGAGCGTCTAAAAGCTCTTGTTGCTTTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTCCTTGAGGATCGACTGGAATCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGATGCACAGATAGATAAAGTTCGTCTGAAAGATGATAATATTGGTAAATTAGATTTTCCATCTCTTACTGGGAATAAAGTTGAAACACAATACACATATCCAACTGTGGAGGGAAACCAAAGCCCAATAATGCTTGACATTAATATTAACAATAATGAAGCATCACCCAGCACTGCAGAAAACCGAAAAGGAGATCCTGTTGCACTGAGCATGCCTATGGAGAAGTCCTCATCAGTTCAAGATTTTTGCACGGGTACTGGTGCAGACATCCCTCAGACTCAAGTACCTGCACAATATTCGAAAAGGTCACGTTCACAGTTGAAATCTTATTTTGCCCACCTAGCAGAGGAGATGTATGTCTACAGGTCTTTACCCCTTGGCCAAGATCGCAGACGTAATCGATATTGGCAGTTTGTTGCATCTGCTTCTAGCAATGATCCTGGTTCTGGCAGGATCTTTGTTGAATGTCATGATGGCAAGTGGTGGCTTATTGATTCTGAAGAGGCCTTTGATTCTCTTTTGACATCATTGGATTCACGTGGCCTCAGGGAATCTCATTTGCGCTTAATGTTGCAAAAGATTGAGAATTCCTTTAAAGAAAATATTCGAAAGAGGAATGCACATTGTACCAAAAATGGAAGCAAAGGCGAAGTTTCTATTAAAATTGAAGCTAATGAACCATATTCTATCCCTGACCACAATGCTGGATCTGACAGTCCTAGCAGTACCCTTCATGACTTGAACACTGATACATCTGAAACTTCGTCATCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGTGAGAAGAAAGCTGCCCTGAGAAGGTATCAAGATTTTCAGAAGTGGCTGTGGAAAGAATGCTATAATTCATCAGTTTTATGTGCAATGAAACATGGGGTAAAGAGATGCAAACCTCAGATGGACATTTGTGATACCTGTCTCGATCTTTGTTTTGTTGAAGACTCTCATTGCAGTTCCTGCCACCGGACTTTTCCCTCAAATAATGGCTTTAATTTTTCTAAGCATGCATTTCAATGTCGAGACAAGTTATCCAAAGATAATTATACTTTGGAATACTCTCTTCCCTTGAGGACAAGATTGCTTAAGGTCCTGTTGGCTTGTATGGAGGTATCTGTTCTATCTGAAGCATTTGGAACAAATTGGACCGATGATATTAGGAGGCACTGGGGTGTAAAGTTGAGCAAATCATCTTCTGTTGAGGAACTTATACAGATATTGACCCTATTTGAGAAAGCACTACGGCGAGATTTTCTGTCATCTAACTTCTCTACAACAGATGAATTGTTGGGATCAAGCAGTATGCCAGAATGTTCTGGGCAGCCTTCAACTGATCCTGAATCTGTTGCAGTGCTTCCATGGGTTCCACTAACGACTGCAGCTTTGTCTCTCAGACTTTTTGAGATTGATTCATCCATCAGCTATGTAAAGCCTGAAAGACTTGAGCCTTCTGAGGAAAAAGAAGCAAGAGAATACATAAGGTTTCCTTCAAGATACACTCACTTGAAATCTAATAGGGAGGTTGAACCAGCAGAATTTGACCACGATGAATTCACTAAAGATAAATCTGTTCCTAAGAAAATTGTACGAAATGGCAATAAACGTAGTCGAGGGACTAATGAACCAGGACGAGGCAAAAAACTGGCTAAAAGAGTGTACAATTCTAAACGAGATGGTGGTCGGAAGAATGCTAAGGTCACTGTCAATCTGAGTCACAAATTAAAACAGCAGGCACGAGGAACACAGGGACAAGGTGCTGGACGAGGTCGCCGAACACTAAGAAAGCGGAGAGTGGGAAAGCGAGCTGTTGAAGATTTGTTGCTGGGCCATACGACTGCTAGTCATAGCTCCAAGATTGATAGAGAACCATTGAAAAATTTGGATGAGGAATGGGATAGAGAAAAGGCAAGTCCAATGACTCCGGTGCACATTGGGGTTGCTGCTGACGTTAGTAATAGTGCTGAAGAGGTAGAATCTGATTATGACCATACTCAGGCTGTGGAATATGATCAAGGAAACTGGGAGGTAGGTTTTAACGGTGTTCCCCCCAACAGATGGAGTAGGGATTTGGTTGGAATGAGTGATGAAGATGTGGATGCTTCTGAAGATGACAATGACAATGGAATTGAAGAGAATGAAGAGGAGGATTCAGAAGCAGATGTTATGAGTGAGGGTTCAGATGGCATGGGAAATAGGGTAGTAAATGTTGGAGGCTCATACTCAGCTTTGTCTGAAGATTCTTCCGATTAG 5262 0.4291 MEAEAEAENNEVKREENSNDNNNNNESNSKFGNSSEGQSKPKRQMKTPFQLETLEKAYAVENYPSEMMRAELSEKLGLSDRQLQMWFCHRRLKDKKELPSKKPRKAAALPDSPVEEPKLASEVGPEYGSGSGSGSSPFTRSELRNVVPRGYYESPQTIMELRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPLAVTDPQKRPSLAYENKMYERHDVRTNKAITRTFHEYPFLPSQSGIRSDVFGQINLPHLHEPMEGPARTPFPLGNEQQPRIHAPQSHSSRVRVLSQPQDKQVIPYPSPPQENDIVPKREPHINTTNTVMNSHYTTDHPIVGQEIPYALPGGQVSHNDAVLRMERKRKIDEARVAKEVEAYEMRMRKELEKQDNLKRKSEERMKKEMERQDRERRKEEERLLREKQREEERLKREQRRELERREKFLLREHLRAEKRRQKEEIRKEKEEERRKAALEKANARRIAKESMELIEDEQLELMELAAASKGLSSIIHIDLDTLQNLESFRDSLCVFPPKSVKLRKPFAIQPWSNSEQNVGNLLMVWRFLITFADVLDLWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGMNQNGAANPGGGHPEIVEGAYAWGFDIRNWQKNLNQLTWPEIFRQLALSAGLGPHLKKRSIAWSYTIDKDEGKSGVDIISTLRNGSAAESAVAKMQERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRDAFRKDPADADSILTEARKKIQIFENGFLAGEDADDVEREEESESDEVDEDPEDEDLVNPSSANQNSEQYEDTNICSSNGKENLDHNIDLLRNEFDTDLPCFPKNGSTDADCPSSVTRSVTRGDLNAGNIDQDNMEIDESISGESWILGLAEGEYSVLSVEERLKALVALVGVANEGNSIRVVLEDRLESANALKKQMWADAQIDKVRLKDDNIGKLDFPSLTGNKVETQYTYPTVEGNQSPIMLDININNNEASPSTAENRKGDPVALSMPMEKSSSVQDFCTGTGADIPQTQVPAQYSKRSRSQLKSYFAHLAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVECHDGKWWLIDSEEAFDSLLTSLDSRGLRESHLRLMLQKIENSFKENIRKRNAHCTKNGSKGEVSIKIEANEPYSIPDHNAGSDSPSSTLHDLNTDTSETSSSFKIELGKSESEKKAALRRYQDFQKWLWKECYNSSVLCAMKHGVKRCKPQMDICDTCLDLCFVEDSHCSSCHRTFPSNNGFNFSKHAFQCRDKLSKDNYTLEYSLPLRTRLLKVLLACMEVSVLSEAFGTNWTDDIRRHWGVKLSKSSSVEELIQILTLFEKALRRDFLSSNFSTTDELLGSSSMPECSGQPSTDPESVAVLPWVPLTTAALSLRLFEIDSSISYVKPERLEPSEEKEAREYIRFPSRYTHLKSNREVEPAEFDHDEFTKDKSVPKKIVRNGNKRSRGTNEPGRGKKLAKRVYNSKRDGGRKNAKVTVNLSHKLKQQARGTQGQGAGRGRRTLRKRRVGKRAVEDLLLGHTTASHSSKIDREPLKNLDEEWDREKASPMTPVHIGVAADVSNSAEEVESDYDHTQAVEYDQGNWEVGFNGVPPNRWSRDLVGMSDEDVDASEDDNDNGIEENEEEDSEADVMSEGSDGMGNRVVNVGGSYSALSEDSSD* 1754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1889 1753 MobiDBLite consensus disorder prediction 1532 1553 - -
Pvu6g1889 1753 Gene3D - 23 98 - -
Pvu6g1889 1753 Coils Coil 374 480 - -
Pvu6g1889 1753 Coils Coil 5 25 - -
Pvu6g1889 1753 Pfam Homeodomain 40 96 IPR001356 GO:0003677
Pvu6g1889 1753 MobiDBLite consensus disorder prediction 1227 1257 - -
Pvu6g1889 1753 ProSiteProfiles HARE-type HTH domain profile. 731 800 IPR007759 GO:0006355
Pvu6g1889 1753 Pfam HB1, ASXL, restriction endonuclease HTH domain 731 799 IPR007759 GO:0006355
Pvu6g1889 1753 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 13 1753 IPR044977 GO:0006357
Pvu6g1889 1753 ProSiteProfiles 'Homeobox' domain profile. 37 97 IPR001356 GO:0003677
Pvu6g1889 1753 MobiDBLite consensus disorder prediction 1700 1726 - -
Pvu6g1889 1753 ProSiteProfiles DDT domain profile. 549 608 IPR018501 -
Pvu6g1889 1753 MobiDBLite consensus disorder prediction 294 313 - -
Pvu6g1889 1753 CDD homeodomain 42 97 IPR001356 GO:0003677
Pvu6g1889 1753 MobiDBLite consensus disorder prediction 97 111 - -
Pvu6g1889 1753 SUPERFAMILY Homeodomain-like 27 96 IPR009057 -
Pvu6g1889 1753 MobiDBLite consensus disorder prediction 1 20 - -
Pvu6g1889 1753 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1120 1192 IPR028941 -
Pvu6g1889 1753 PANTHER HOMEOBOX DOMAIN PROTEIN 13 1753 - -
Pvu6g1889 1753 MobiDBLite consensus disorder prediction 388 415 - -
Pvu6g1889 1753 Pfam DDT domain 551 605 IPR018501 -
Pvu6g1889 1753 MobiDBLite consensus disorder prediction 829 878 - -
Pvu6g1889 1753 MobiDBLite consensus disorder prediction 97 141 - -
Pvu6g1889 1753 MobiDBLite consensus disorder prediction 1 50 - -
Pvu6g1889 1753 MobiDBLite consensus disorder prediction 856 878 - -
Pvu6g1889 1753 MobiDBLite consensus disorder prediction 1230 1257 - -
Pvu6g1889 1753 SMART testlast3 549 608 IPR018501 -
Pvu6g1889 1753 MobiDBLite consensus disorder prediction 1689 1753 - -
Pvu6g1889 1753 SMART HOX_1 39 101 IPR001356 GO:0003677
Pvu6g1889 1753 MobiDBLite consensus disorder prediction 21 46 - -
Pvu6g1889 1753 MobiDBLite consensus disorder prediction 1575 1602 - -
Pvu6g1889 1753 MobiDBLite consensus disorder prediction 832 855 - -
Pvu6g1889 1753 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 940 983 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1889 Pvu-Chr6 29136907 29147043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1889 33 1600 Homeobox Transcription Factor Family AT1G28420 50.404 0.0 1304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pvu6g1889 WSD 5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1889 - - gmx:100777465 2833.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1889 6 29136907 29147043 Pvu6g1889 6 29136907 29147043 ECH
Pvu2g2392 2 39779761 39789737 Pvu6g1889 6 29136907 29147043 PCT