Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1887 ATGCAACTGGGCCGGCGTCACTTGTGGCCCAAATACCAGCGCCGTCACTTCACTCGACCTCTCCAACTTCAACGTCGCAGGCCCATTCTCCGCCACCTTCCTCTGCCGCCTCCCCAACCTCACCTCCATCATCCTCTTCAACAACTCCATCAACCAAACCCTCCCTCTCCAAATATCCCTCTGCACCCCTCTCCTCCACCTCGACCTCTCCCAGAACCTCCTCACCGGCACCCTCCCCCACACCCTCCCCCTCCTCCCCAGCCTCCGCTACCTCGACCTCACCGGCAACAACTTCTCCGGCCCCATTCCCCCTCCTTCGGAACCTTCCAGAACCTCCAAACTCTCTCCCTCGTATTCAACCTCCTCGACGACGTCCTTCCGCCTTCTCTCTTCAACATCACCTCCCTCAAAACGCTCAACCTCTCCTACAACCCCTTCCATCCTTCCCCCATTCCTTCCTCCCTCGGCAACCTCACCAACCTCGAAACGCTCTGGCTCAGCGCCTGCAATCTCGTCGGCCCCATACCCGACTCCCTTGGGAACCTCAAAAGCCTTCGAGTCTTGGATTTGACCTCCAACAACCTCTATGGACCCATCCCCAGTTCGCTCACTCGCATCACCACTGTCAAGCAGATTGAGCTGTACAACAACTCGCTCTCCGGTGAATTGCCTAAAGGAATCTCCAACCTCACTTCGTTGAGGCTCTTTGATGTTTCCATGAACCATTTGAGTGGGAGCATTCCCGATGAGCTGTGTCGTCTGCCTCTCGAGAGTCTCAACCTCTATGAGAACGGTTTCACCGGGGAGTTGCCGCCGAGCATTGCTGACTCGCCCAACCTTTATGAGCTTAAGGTGTTCGGGAACAAACTCACCGGGAAATTGCCGGACAGTTTGGGGAAGTCTGCTCCTTTGAGGTGGCTTGACGTTTCCACCAACCGTTTCTCCGGTGGGATTCCTGCGAGTCTCTGCGCGCGCGGCGAGCTGGAGGAGTTGTTGATGCTCGGGAACGAGTTCTCCGGGGAGATACCGGCCAGTTTGGGCTCGTGTCGGAGCTTGACGCGTGTGAGGTTGGCTACGAACCGGTTGTCCGGCGAGGTTCCGGCGGGTATGTGGGGTCTTCCACATGTGTATTTGCTTGAACTGATGGATAACTTGTTTAGTGGCTCGATTGCGAGAACCATTGGTGGGGCCGGAAATTTGTCGTCGTTGATTCTCACGAAGAACAATTTTTCCGGTGTGATCCCCTACGAGATTGGGTGGTTGGAGAATCTTCAAGAGTTTTCTGGTGGTGATAACAGGTTCAGTGGGTCGTTGCCTGGGAATGTTGTGAATCTTGGGCAGCTTGGGACTCTTGATCTTCACAACAATATGTTATCCGGGGAGCTCCCCGAGGGGATTCAATCGTGGAAGAAACTCAATGACTTGAATTTGGCTAATAATAAGATTGGTGGGAAGATTCCTGATGGAATTGGCAGTTTGGCTGTGTTGAATTTTCTTGATCTTTCCAACAATCAATTTTCTGGGAATGTTCCTATGGGGTTGCAGAATTTGAAGCTCAATCAGCTTAATTTGTCTTATAATAGGCTTTCTGGAAACCTTCCCCCACTGCTGTCCAAGGATATGTACAGGGATAGTTTTATTGGTAATCCTGGCTTGTGCGGGGATTTCAAAGGTTTGTGTGATGGCAAAGATGGGGATAAGGGTAAGGGTGTTGTGTGGATTCTGCGAGCTATTTTTGTAGTTGCCACTTTGGTGTTTGTCATCGGTGTGGTCTGGTTTTTCTTAAGGTATAGGAATTTCAAGAATGCTGAGAGATCTGTTGATAAATCAAAGTGGACTTTGATGTCGTTTCATAAACTGGGTTTCAGCGAAGATGAGATCTTGAATTGCCTCGATGAAGATAATGTGATAGGAAGTGGGTCTTCCGGGAAGGTTTACAAGGTTGTGTTGACCAGCGGCGAAGTGGTTGCTGTGAAGAAGATATGGGGTGGGGTCAAGAAGGAAATAGACAGTGGAGATGTGGAGAGGGGTCAGTTTTATCAAGACAGTGCTTTTGACGCAGAGGTTGAAACTTTGGGAAAAATTAGGCACAAGAACATTGTCAAACTGTGGTGTTGCTGCACTACTAGGGACAGCAAGCTATTGGTTTATGAGTATATGCCGAATGGTAGTCTGGGTGATTTGCTGCATAGCAATAAAGGAGGGTTGTTGGATTGGCCAACTAGGTATAAGATAGCTGTTGATGCTGCAGAAGGGCTCTCTTATTTGCATCACGACTGTGTTCCTTCAATTGTTCATAGAGATGTGAAATCTAATAACATCTTGTTGGATGGGGACTTCGGTGCAAGGGTGGCGGATTTTGGAGTGGCTAAGGTAGTTGATGCCACCGGGAAAGGAACGAAATCCATGTCTGTCATAGCTGGCTCTTGTGGGTACATTGCACCAGAATATGCATATACACTTAGAGTGAACGAGAAGAGTGACATATATAGTTTTGGTGTTGTCATACTTGAGTTGGTTACTGGAAAGAGGCCCATTGACCCTGAATTTGGGGAAAAAGACTTGGTTATGTGGGCTTGCACCACCTTAGATCAGAAAGGCGTGGACAGTGTGATTGACTCGAGGCTTGATTCTTGTTTCAAAGATGAAATTTGCAAGGTCCTCAACATTGGCCTCATGTGCACCAGTCCTCTTCCAATCAACCGGCCTGCAATGAGAAGGGTGGTGAAGATGTTACAAGAGGTGGGCACAGAGAACCAAACAAAATCAGCCAAGAAAGATGGAAAGTTGTCCCCATATTACTATGACGATGGCTCTGATCATGGAAGTGTTGCTTAG 2838 0.4944 MQLGRRHLWPKYQRRHFTRPLQLQRRRPILRHLPLPPPQPHLHHPLQQLHQPNPPSPNIPLHPSPPPRPLPEPPHRHPPPHPPPPPQPPLPRPHRQQLLRPHSPSFGTFQNLQTLSLVFNLLDDVLPPSLFNITSLKTLNLSYNPFHPSPIPSSLGNLTNLETLWLSACNLVGPIPDSLGNLKSLRVLDLTSNNLYGPIPSSLTRITTVKQIELYNNSLSGELPKGISNLTSLRLFDVSMNHLSGSIPDELCRLPLESLNLYENGFTGELPPSIADSPNLYELKVFGNKLTGKLPDSLGKSAPLRWLDVSTNRFSGGIPASLCARGELEELLMLGNEFSGEIPASLGSCRSLTRVRLATNRLSGEVPAGMWGLPHVYLLELMDNLFSGSIARTIGGAGNLSSLILTKNNFSGVIPYEIGWLENLQEFSGGDNRFSGSLPGNVVNLGQLGTLDLHNNMLSGELPEGIQSWKKLNDLNLANNKIGGKIPDGIGSLAVLNFLDLSNNQFSGNVPMGLQNLKLNQLNLSYNRLSGNLPPLLSKDMYRDSFIGNPGLCGDFKGLCDGKDGDKGKGVVWILRAIFVVATLVFVIGVVWFFLRYRNFKNAERSVDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLTSGEVVAVKKIWGGVKKEIDSGDVERGQFYQDSAFDAEVETLGKIRHKNIVKLWCCCTTRDSKLLVYEYMPNGSLGDLLHSNKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPSIVHRDVKSNNILLDGDFGARVADFGVAKVVDATGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKRPIDPEFGEKDLVMWACTTLDQKGVDSVIDSRLDSCFKDEICKVLNIGLMCTSPLPINRPAMRRVVKMLQEVGTENQTKSAKKDGKLSPYYYDDGSDHGSVA* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1887 945 Pfam Protein kinase domain 633 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1887 945 MobiDBLite consensus disorder prediction 50 95 - -
Pvu6g1887 945 ProSitePatterns Protein kinases ATP-binding region signature. 637 660 IPR017441 GO:0005524
Pvu6g1887 945 MobiDBLite consensus disorder prediction 31 106 - -
Pvu6g1887 945 ProSiteProfiles Leucine-rich repeat profile. 518 540 IPR001611 GO:0005515
Pvu6g1887 945 SMART serkin_6 631 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1887 945 MobiDBLite consensus disorder prediction 919 945 - -
Pvu6g1887 945 Gene3D Ribonuclease Inhibitor 231 562 IPR032675 -
Pvu6g1887 945 SUPERFAMILY L domain-like 304 553 - -
Pvu6g1887 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 764 776 IPR008271 GO:0004672|GO:0006468
Pvu6g1887 945 ProSiteProfiles Protein kinase domain profile. 631 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1887 945 Gene3D Ribonuclease Inhibitor 94 230 IPR032675 -
Pvu6g1887 945 PANTHER LRR RECEPTOR-LIKE KINASE 117 927 - -
Pvu6g1887 945 Gene3D Phosphorylase Kinase; domain 1 615 719 - -
Pvu6g1887 945 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 117 927 - -
Pvu6g1887 945 SMART LRR_typ_2 445 468 IPR003591 -
Pvu6g1887 945 SMART LRR_typ_2 182 206 IPR003591 -
Pvu6g1887 945 SMART LRR_typ_2 109 133 IPR003591 -
Pvu6g1887 945 SMART LRR_typ_2 493 516 IPR003591 -
Pvu6g1887 945 SMART LRR_typ_2 230 254 IPR003591 -
Pvu6g1887 945 Pfam Leucine Rich Repeat 135 158 IPR001611 GO:0005515
Pvu6g1887 945 SUPERFAMILY Protein kinase-like (PK-like) 626 912 IPR011009 -
Pvu6g1887 945 MobiDBLite consensus disorder prediction 920 934 - -
Pvu6g1887 945 Gene3D Transferase(Phosphotransferase) domain 1 720 938 - -
Pvu6g1887 945 SUPERFAMILY L domain-like 92 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1887 Pvu-Chr6 29114156 29118653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1887 105 945 Receptor kinase-like Gene Family AT1G28440 69.894 0.0 1205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pvu6g1887 Pkinase 2.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1887 - - gmx:100776936 1474.53