Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1884 ATGACATGGTGCAATGACCCTGATGAAGAGAGGAGGATTGAATCAATCACGCCAACTATGATTATCTCTCAGAAGACTGATGTCAGTGACATAAAACTCTCCGAAGAAATTCGAACTGTAACATGCCCCTCGTGCGGTCATACAATTGAATTCAAGGATCAGGGTGGAATTCATGAGTTGCCGGGGTTACCAGCTGGAGTGAAATTTGATCCAAATGACCAAGAAATACTAGAGCATTTAGAGGCAAAAGTGGCGTCTGATGCATGCAAGCTTCATCCCCTTATTGATGAGTTCATACCAACTCTTGAAGGCGAGAATGGGATTTGCTCTACGCACCCAGAAAAACTACCAGGAGTTAGCAAAGATGGACAGATCCGGCACTTCTTTCACAGGCCATCAAAAGCATACACAACTGGAACAAGGAAAAGAAGAAAGGTCCACACAGATGAAGAAGGAAGTGAAACAAGATGGCACAAAACGGGAAAAACTAGAGCCGTTTTTGCAGCTGGTGGTGCTGTCAAAGGTTTTAAGAAAATACTAGTACTCTACACCAACTATGGCAGGAAAAAGAAGCCCGAGAAGACTAATTGGGTGATGCATCAGTATCACCTTGGCAGCACTGAAGAAGAGAAAGATGGAGAATTAGTTGTTTCAAAGATCTTCTATCAGACACAACCCAGACAATGTGGTAATAATCCCATTATCACAGAGGAGCCGTACCAAAAAATGATGAACATTAATGATGGAAGTGGCCACAACAACAATACATCAACACCTAAAACTGCAACTCTTGTGGATCGCTACAATGCTCCTTACATAAATTATGGTAATGAGCATTTGAGTTATAACAACTTGGTTGTTGAAGCTGATGGCTCTTATATTCGCTATGCAATGGATGCAAAGAAAGCAAGAGTTGAAAGTAACAGTGGGAAGAGCTTCTAG 942 0.4193 MTWCNDPDEERRIESITPTMIISQKTDVSDIKLSEEIRTVTCPSCGHTIEFKDQGGIHELPGLPAGVKFDPNDQEILEHLEAKVASDACKLHPLIDEFIPTLEGENGICSTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRAVFAAGGAVKGFKKILVLYTNYGRKKKPEKTNWVMHQYHLGSTEEEKDGELVVSKIFYQTQPRQCGNNPIITEEPYQKMMNINDGSGHNNNTSTPKTATLVDRYNAPYINYGNEHLSYNNLVVEADGSYIRYAMDAKKARVESNSGKSF* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1884 313 Gene3D NAC domain 72 227 IPR036093 GO:0003677|GO:0006355
Pvu6g1884 313 ProSiteProfiles NAC domain profile. 63 223 IPR003441 GO:0003677|GO:0006355
Pvu6g1884 313 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 1 279 - -
Pvu6g1884 313 Pfam No apical meristem (NAM) protein 64 204 IPR003441 GO:0003677|GO:0006355
Pvu6g1884 313 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 279 IPR044799 GO:0003700
Pvu6g1884 313 SUPERFAMILY NAC domain 58 223 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1884 Pvu-Chr6 29094313 29098175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1884 1 232 NAC Transcription Factor Family AT4G28500 71.245 2.30e-120 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu6g1884 NAM 9.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1884 - - gmx:100809389 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1884 6 29094313 29098175 Pvu6g1884 6 29094313 29098175 ECH
Pvu6g1884 6 29094313 29098175 Pvu11g1273 11 25661581 25664190 ECH