Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1880 ATGGGCTTGATCGATCTGAACACCACCGAGGATGATGAAGCTCCATTATCTGCTTCTTCTTCTTCTGCTGCTTCATCTTCTTCTTCTCACTCGGGGATAAGCACTTCTGCTTCAACCTTGGTTGTTCCTCCTCCGCCTCCTCCTCCTCCTCCTCCTTCCGTGTGCTTGGAACTGTGGCACGCGTGTGCGGGCCCTTTGATCTCTCTGCCGAAGAAAGGAAGCGTGGTTGTGTACTTGCCACAGGGACACTTTGAGCATGTTCAGGATTTTCCGGTCACTGCTTATGATATCCCACCCCATGTGTTCTGTCGTGTTCTTGATGTCAAGCTCCATGCAGAGGAAGGGAGCGATGAAGTATATTGCCAAGTGTTGTTGGTTCCTGAAAGCGAGCAACTGGAGCAAAGTTTGCGTGAAGGCGAAATTGAAGCTGATGGGGAAGAGGGGGACACTGAAGCTATGGTGAAGTCAACAACTCCCCATATGTTCTGCAAGACTCTCACAGCTTCAGACACCAGCACTCATGGTGGATTTTCAGTGCCTCGCCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGACCTTCACAGGAGCTCGTGGCAAAGGATCTGCATGGACTGGAATGGAGGTTTCGTCATATATACAGGGGTCAACCACGGAGGCATTTGCTAACTACTGGGTGGAGTGCATTTGTTAACAAAAAGAAGCTTGTTTCTGGAGATGCTGTGTTGTTTCTTAGGGGCGATGATGGAGAACTGAGATTAGGGATTCGTAGGGCAGCCCAATTGAAAGGTTCTGGTTCCTTTGCAGTTCCCTCTGGTCAGCAATTGAATCCTGGAACTTTCATGGATGTTGTTAATGCATTATCTACAAGATGTGCTTTTAGTGTTTGCTACAATCCAAGGTTTAGCTCTTCGGAATTCATCATACCTTCTCACAAATTCTTAAAGAGTCTTGACAGTTCTTATTTAGTTGGGATGAGGTTCCGGATGCGCTTCGAAACGGAAGATGCTGCAGAGCGGAGATTTACTGGATTAATTGCTGGAATCAGTGATGTCGATCCTGTTAGGTGGTCTGGATCAAAATGGAGATGCCTACTGGTAAGGTGGGATGACATGGAAGCTGCTAGGCACAATAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCAAGTTCCAGCAACATGATGGCAGCTGGTTTGAAGAGGACCAGGATTGGAATGAATTCAACGAAGATGGAATTTCCTTCTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATCCTCCGTTTGATGGTATTAATGCTCCGAGTCCTCGGTTATATGACTTAGGGAGGTACTATCTTGGTCCAAACTGTTCTGGGATTCCTCCTACAGGAAATAACATCAGAATGCCACATGCAGCATCTGATTTTTCCTGCAATGGCACAGGCTTTAGTGAATCTTTCGGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGCCAACCATATGGAAGATCATTGTCATTCGAGGAGGCTCGAGCTAATGGTCGATTTGGACATTTTGATGGTTATCAGTTGCTCAACTCCAGAAATGGGTGGTCTGTACAGATGCATGACAATGCTCCACATTTGCATGCATCCGTTACACCTTCACAAGTGTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCAGTTAGTCCAGTTTCCAACTGTGATTATAATAATAAGAAACATAGTAAGATGTACCAAGGTTTATGCGCATCTGAAGTGAAAGCTAGAACTTTTGCATCTTCCCAATCTGATGATCATACTTTCTCTAGGCGAGCTCCGGAAAGGGCTAGTTCTTTAGGTATGTTTGATGTTCATAATCAGTTGGGTAGTTCACAGTCACACAATTCTGTGTCAGCATTGAGAAACAATCAAGAGTTGGTTTCGTCATGTAAAAGCAGTTGTAGACTTTTTGGTTTTTCATTGACTGAGGACGCACATGTTGCAAATAAAGAGGTTGATGCCTCTACCATCACTTTACCATTGAATGCTGGACCTTCCTTTACTAGACTTGTTGAAGATGAGTTCCATCCCAGCCGGGCACTTCAGAGCAAGGCGGTTGGAAGTAACTGCATAAAGGGTGTGTTGCAGTATTGA 2205 0.4544 MGLIDLNTTEDDEAPLSASSSSAASSSSSHSGISTSASTLVVPPPPPPPPPPSVCLELWHACAGPLISLPKKGSVVVYLPQGHFEHVQDFPVTAYDIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQLEQSLREGEIEADGEEGDTEAMVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKGSGSFAVPSGQQLNPGTFMDVVNALSTRCAFSVCYNPRFSSSEFIIPSHKFLKSLDSSYLVGMRFRMRFETEDAAERRFTGLIAGISDVDPVRWSGSKWRCLLVRWDDMEAARHNRVSPWEIEPSGSASSSSNMMAAGLKRTRIGMNSTKMEFPSPNGIGTSDFGESLRFRKVLQGQEILGVNPPFDGINAPSPRLYDLGRYYLGPNCSGIPPTGNNIRMPHAASDFSCNGTGFSESFGFQKVLQGQEILPSQPYGRSLSFEEARANGRFGHFDGYQLLNSRNGWSVQMHDNAPHLHASVTPSQVSSPSSVLMFQQAVSPVSNCDYNNKKHSKMYQGLCASEVKARTFASSQSDDHTFSRRAPERASSLGMFDVHNQLGSSQSHNSVSALRNNQELVSSCKSSCRLFGFSLTEDAHVANKEVDASTITLPLNAGPSFTRLVEDEFHPSRALQSKAVGSNCIKGVLQY* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1880 734 Pfam Auxin response factor 289 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu6g1880 734 Gene3D - 326 399 - -
Pvu6g1880 734 Pfam B3 DNA binding domain 162 263 IPR003340 GO:0003677
Pvu6g1880 734 MobiDBLite consensus disorder prediction 12 39 - -
Pvu6g1880 734 SMART B3_2 162 264 IPR003340 GO:0003677
Pvu6g1880 734 PANTHER AUXIN RESPONSE FACTOR 45 734 - -
Pvu6g1880 734 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 45 734 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu6g1880 734 SUPERFAMILY DNA-binding pseudobarrel domain 155 269 IPR015300 -
Pvu6g1880 734 CDD B3_DNA 160 262 IPR003340 GO:0003677
Pvu6g1880 734 MobiDBLite consensus disorder prediction 1 50 - -
Pvu6g1880 734 Gene3D - 160 264 IPR015300 -
Pvu6g1880 734 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1880 Pvu-Chr6 29058029 29064102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1880 161 519 B3 DNA Binding Superfamily AT2G33860 60.278 1.48e-146 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu6g1880 B3 3.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1880 K14486 - gmx:100789906 1232.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1880 6 29058029 29064102 Pvu6g1880 6 29058029 29064102 ECH