Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1867 ATGGCTTCTTCTAACAGACACTGGCCGAGCATGTTCAAGTCTAAGCCCTGCAACCCTCACCACCAATGGCAGCATGACATCAACTCCTCCCTCATCTCAACTGGTTGCCACAGAAGCCCTTACACTTCAGGTACGGGTTGTGAAGAGAGAAGTCCAGAACCAAAGCCAAGGTGGAATCCAAAACCTGAGCAAATTCGCATTCTGGAAGCTATATTCAACTCAGGAATGGTGAATCCTCCCAGAGATGAGATAAGAAAGATAAGGGCACAGTTGCAAGAGCATGGCCAAGTGGGTGATGCAAATGTCTTCTATTGGTTTCAGAACCGCAAATCAAGGAGCAAACACAAGCTTCGTCATCTCCAAAACTCAAAGAACCAGAACCTTGAAAATCAACAAAACCCCACTTCTCTCCCTCAAATCACTGCACCATCATCCTCATCTTCCTCCTCTGAGAAATCTTCTCCAAAAGAATTAATACCAACCAAGGTATTCTCCATTGGATTCTCTAACGTCACCGATGTGGTACCTAATTCTCCAACTACTTCTGTGAACCAGACCTATTTTCAGACTCACAATGAGTCTTCTATGCTTCCACCACCACCACCTGCTGCTGCCCCACACACTGGGGCTTTCTTCTTCCCAGTGCAACATCATGCGCAGGGAGGAGCACATAGTACGGTGGCATCACAAGGTTTTTGTTTCTCAGAGCTGTCTAATGTTGTTCAACTTCAATCACCTCCTCAACATAACATTGGTCCTTGCACTAGCCTCTTGCTCAGTGAAATCGTAGGCCATGGTGCTGCTGCATCATCAAAGAAAGATCTAGAGCAAGACAAGAGTCTGAAAATAATGCACCAGCCCTCACTGTTTAATTTCTGTGTCACTCCCACAACAACAGCTCCTACTTCTGCCTCTGCTGTACCTCCCATCACTACCTCAACCACTACTGTTCTATCCCCCGTCATTGCTCAAGTTCATGGCATGGGAGATCCAGCTGCTGCGGCGAGATCAACGGTGTTCATTAACGATGTGGCATTCGAGGTAGCGGTGGGACCTTTCAATGTGCGTGAAGCTTTTGGAGATGATGCTGTGCTCATCCATGCCACTGGTCAACCTGTGCTAACAAACCAATGGGGTGTCACTCTTCATTCACTCCAGCATGGTGCATGTTATTATTTGATATAG 1185 0.4684 MASSNRHWPSMFKSKPCNPHHQWQHDINSSLISTGCHRSPYTSGTGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEHGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNQNLENQQNPTSLPQITAPSSSSSSSEKSSPKELIPTKVFSIGFSNVTDVVPNSPTTSVNQTYFQTHNESSMLPPPPPAAAPHTGAFFFPVQHHAQGGAHSTVASQGFCFSELSNVVQLQSPPQHNIGPCTSLLLSEIVGHGAAASSKKDLEQDKSLKIMHQPSLFNFCVTPTTTAPTSASAVPPITTSTTTVLSPVIAQVHGMGDPAAAARSTVFINDVAFEVAVGPFNVREAFGDDAVLIHATGQPVLTNQWGVTLHSLQHGACYYLI* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1867 394 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 394 IPR044557 GO:0003700|GO:0050793
Pvu6g1867 394 MobiDBLite consensus disorder prediction 39 62 - -
Pvu6g1867 394 SMART HOX_1 53 120 IPR001356 GO:0003677
Pvu6g1867 394 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Pvu6g1867 394 MobiDBLite consensus disorder prediction 124 156 - -
Pvu6g1867 394 SUPERFAMILY Homeodomain-like 51 119 IPR009057 -
Pvu6g1867 394 Pfam Homeodomain 55 115 IPR001356 GO:0003677
Pvu6g1867 394 CDD homeodomain 54 116 IPR001356 GO:0003677
Pvu6g1867 394 Gene3D - 55 121 - -
Pvu6g1867 394 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1867 Pvu-Chr6 28968855 28971985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1867 1 394 Wox Gene Family AT2G33880 47.268 3.47e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pvu6g1867 Homeodomain 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1867 - - gmx:100785125 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1867 6 28968855 28971985 Pvu6g1867 6 28968855 28971985 ECH