Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1866 ATGGGAACCAAGAAAAACTACGAAGAACAAACCTCGTTTTCCCAATCCCAAACAGAGTTCTTACCCTTCAACGAGAACGACTCTCAGGACATGGTCATATACCAAGTTCTCAACGAGGCTAATGCTCTCTCCACCACATTCCTCCCTCACCAAAGGCTCCACCAACCGCAATTGGGCCTCGAGCCCACCAGAAACATCGCCAAAAAACACTACAGAGGAGTTCGCCGCCGACCCTGGGGGAAGTACGCGGCGGAGATTCGCGACTCGGCACGCCACGGCGCCAGAATATGGCTCGGCACCTTCCAGACCGCCGAAGAAGCCGCCATGGCTTACGACCGCGCGGCGTTCAAGATGAGAGGCGCCAAGGCGTTGCTGAATTTCCCAGCCGAAATTGTGGCCGCAGCCACCGAGTTATCTTTCAATAATAACAACAACAACTACGATGCTGTTTCTGATTCTAGTGGTGGGAGCTCTTGCACCACCAATAATTCCACTCAGGTAAATGGCTCTCGCTCAGAAAGCACAAGTAGCACCAGTTAG 540 0.5296 MGTKKNYEEQTSFSQSQTEFLPFNENDSQDMVIYQVLNEANALSTTFLPHQRLHQPQLGLEPTRNIAKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGAKALLNFPAEIVAAATELSFNNNNNNYDAVSDSSGGSSCTTNNSTQVNGSRSESTSSTS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1866 179 CDD AP2 69 129 IPR001471 GO:0003700|GO:0006355
Pvu6g1866 179 SUPERFAMILY DNA-binding domain 70 130 IPR016177 GO:0003677
Pvu6g1866 179 Pfam AP2 domain 70 120 IPR001471 GO:0003700|GO:0006355
Pvu6g1866 179 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Pvu6g1866 179 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Pvu6g1866 179 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 9 145 - -
Pvu6g1866 179 PANTHER DNA-BINDING DOMAIN 9 145 IPR044808 GO:0003700|GO:0009873
Pvu6g1866 179 MobiDBLite consensus disorder prediction 150 179 - -
Pvu6g1866 179 SMART rav1_2 70 134 IPR001471 GO:0003700|GO:0006355
Pvu6g1866 179 ProSiteProfiles AP2/ERF domain profile. 70 128 IPR001471 GO:0003700|GO:0006355
Pvu6g1866 179 Gene3D AP2/ERF domain 69 130 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1866 Pvu-Chr6 28956271 28957252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1866 21 131 AP2-EREBP Transcription Factor Family AT5G47220 50.000 1.99e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu6g1866 AP2 6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1866 K13433 - gmx:100811533 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1866 6 28956271 28957252 Pvu6g1866 6 28956271 28957252 ECH