Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1865 ATGGATAATCATAGTAATCATGTTGCAACTTCTGAAGGGATTCTTGAGAATGTGTGGGCCAAAATTATGAGCAGTGATAAAGCAGATGGAAGAAAAGGTGATGCAGCAGAATCTTCTAACTCTTGGGAAGAACTTCCTAACCTTGATGGTAGAGAAGGGTCCATGGAAATTCTACAAAGACTTCCAAGTTTAGGGAGGTGGATATCAATGGGAGCTGATTTCTGGGAAGAAGTTTTAGATGGTATTGCTCTACCTAACACAAGCAATACAGAATATTCTAGCAATAACAATATGGAAAGTGGTGGTGAGTGTGATAGCAAGGTGGAAGATGCTGTGAGAATAGAGAAGGAAGTTACAAAACACTACAGAGGAGTTAGGAGAAGGCCTTGGGGTAAATATGCTGCAGAGATTAGAGACTCATCCAAGAAAGGTGCTAGAGTTTGGCTTGGAACATTTGACACGGCTGAAGAAGCTGCTTTGGCATATGACAAGGCTGCTTTGAGGATTAGGGGTCCAAAGGCATACCTTAATTTCCCACTTGAGAGGGTTGCAAAGGCTTTAGGATGTGACAGCAAAGGAACTCATCTTACTTGCAGGAGCATAGGTAACAGAGAAAAAATGATCAACTCTAGGAGGAGGGGATCAAGGGAAAGGGAAGTGTTTGATGATGATATGATGAATGAAGAACCTGCAAGAAAAAAGTTGGAATGCATGGTAGAAAATGAAATAGGTGTTTTTGTATTTCAGGACCTAGGAAAGGATTACTTGGACAGTTTGCTGTCTTCTTTTTGA 792 0.4104 MDNHSNHVATSEGILENVWAKIMSSDKADGRKGDAAESSNSWEELPNLDGREGSMEILQRLPSLGRWISMGADFWEEVLDGIALPNTSNTEYSSNNNMESGGECDSKVEDAVRIEKEVTKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDTAEEAALAYDKAALRIRGPKAYLNFPLERVAKALGCDSKGTHLTCRSIGNREKMINSRRRGSREREVFDDDMMNEEPARKKLECMVENEIGVFVFQDLGKDYLDSLLSSF* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1865 263 SMART rav1_2 121 185 IPR001471 GO:0003700|GO:0006355
Pvu6g1865 263 CDD AP2 120 179 IPR001471 GO:0003700|GO:0006355
Pvu6g1865 263 Pfam AP2 domain 121 171 IPR001471 GO:0003700|GO:0006355
Pvu6g1865 263 ProSiteProfiles AP2/ERF domain profile. 121 179 IPR001471 GO:0003700|GO:0006355
Pvu6g1865 263 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 263 - -
Pvu6g1865 263 Gene3D AP2/ERF domain 120 181 IPR036955 GO:0003700|GO:0006355
Pvu6g1865 263 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Pvu6g1865 263 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Pvu6g1865 263 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 16 263 - -
Pvu6g1865 263 SUPERFAMILY DNA-binding domain 121 180 IPR016177 GO:0003677
Pvu6g1865 263 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1865 Pvu-Chr6 28949911 28950707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1865 14 263 AP2-EREBP Transcription Factor Family AT4G18450 37.829 9.38e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu6g1865 AP2 3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1865 - - gmx:100820226 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1865 6 28949911 28950707 Pvu6g1865 6 28949911 28950707 ECH