Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1861 ATGCATTTCCTTTCAACTAATCCTCAAGCACAAACAATGACTTTGCTCATCTTTTATTTTCTCATGTCCCTTGTTCTTATTAATGGCTACCAAGATGAAGCTACAAATGTACACAACAAGGTTATATCTGTTGGGGCAATCATAGATGTGAATTCTCGCATTGGGAAAGAACAGCAAGTAGCCATGGACATTGCAGCTCGAAGTTACAACAGCACTTCAAAGACCTACAAGTTGGCTCTCTATTTTCGGAACTCCACCAAGGATCCCATCCGAGCCATCACTCTTGCTGAAGAGATGATTAATAAGCAAAAGGTGCAAGTGATTATTGGGATGCACAGATGGTCAGAAGCAGCTCTAGTGGCTGAAACAGGAAGCCAAGCTCAAGTTCCTATCATAGCATTTGCAGAACCTACCATAACCCCACCGTTGATGACTAAGCGGTGGCCTTTTTTGGTGAGAATGACTAGAAGTGGTTTATCATATATCAAATGCATTGCAGATATAGTGAAAGCTTTTGGTTGGCAGAGAGTAGTAGCTATCTATGAAGATGATGCATATGGAGGTGATTATGGCATGCTAGCACTACTATCTGAGGCCCTCCAGAATGTGAGTTCATTGATTGATTATCACTTAGTTCTTCCACCTATTTCTTCTCTGCATGATCCAGGAGGGTTTATTCGTGAAGAGCTGTTGAAGTTGGTGCAAACCCAATCTCGCGTGTTCATTGTGCTGCAATCTTCATTAGAAATGGCTATCCATTTGTTTAAAGAAGCCTCAAAAATGGGACTGGTGGACAAAGAATCAGCCTGGATACTCCCAGAGAGCATAACAAATTTGCTGGACTCTGTCAACAAGTCTGCTATTTCCTATATGGATGGAGCTTTAGGAATCAAGACGTACTACTCCGAAATAAGCAGTGAGTACCAAGATTTTGAGGCTCAATTCAGGAGAACATTTTGGTCTAAGAATGTGGAGGAAGATAACCGCTACCCCGGATTTTATGCATTGCAAGCATATGATAGCATTAAAATTGTGACCCAAGCAGTGGACATAATGACCAGTAGAAACACTACCAACCCAAAGAAATTACTACGAGAAATACTGTCTACCAGTTTTCTTGGTTTAAGCGGTCATATTCAATTTGAAGATGGGGCACTCCAGAAGACTTCTATTTTAAGGATAGTAAATGTGGCTGGGAAGAGTTACAAGGAACTATGCTTTTGGAGTGAACAATATGGGTTCACCACAAACATCCCTACAGAAAAAGGTGGATATTCTGGTGCTGGTAATACAGAATGTTTCAGTGGTGTTCGATGGCCTGGGAATGTGAAGCACTATCCAAAAGGGTGGAACATGCCTACTGCACAAAATCCAATGAAAATTGCAGTCCGCAGCAGAACCTCTTTTTCCAAGTTTGTCAAGGTTGATTATGATCATAATGGTAATCCTGCAAATTATAGTGGATTTTGTATTGATATTTTTCAGAGTGTGCAAGGCCTTTTGGGGTATGACTTGCCATATAAGTATTATCCTATTGATGGAACCTATAATGATTTGGTTCAGCTTGTCTATAACAAGAGTTATGATGCCGCAGTCGGGGACATGACAATACTAGAGGAAAGACTGCAGTATGTGGATTTTACAGTGCCATATGCAGAATCAGGATTGTCAATGATAGTTCCATCAAAGTCTAAAGAGTCAGCATGGATGTTCACAAAGCCCTTTACCTGGGAACTGTGGATGGTTACAGGTTCCATTTTGATTTACACAATGTTAGTAGTTTGGTACCTTGAGAGAGAATCCAATCCTGAGTTTCATGGCAATTGGAAGACCCAAATCAGCACAGCTCTTTGGTTTACCTTCTCCTCTTTGTTTTTCGCTCACAGGGAAAAAATGCATAGCAACTTAACTCGCATGGTGATGGTCTCATGGCTCTTGCTAGTTCTGATCCTTACCTCATGCTACACTGCCAGTCTTTCTTCAATGCTCACAGTTAAAAAACTGCAACCAAATGTCACAGATATTGAGTGGTTGAAGAGGAACAACATGAAAATTGGTTGTGATGGCGACTCATTTGTTAGGTCGTTCCTAGAGAAAGTAGAAGGGTTCCATCCTGAGAACATAATCCATGTTACTGATGAATACAAGTATGATGATGCTTTTCAAAATAACACCATAGCAGCTGCCTTTCTTGAACTCCCATATGAAAAGGTATTCATTACTGAATACTGCGATAGATACACGGGTTCCACCCCCAGAACCAGATTTGGAGGACTGGGCTTTATGTTCCAGAAAGGTTCACCAGTGACTAGAGACGTGTCAAAAGCTATATTACATCTGTCAGAAAGGGCAGAGCTGAAGAAGTTGGAAGAGAAGTGGTTGACTACCTCCAGCAAGTGCTCCTCCGACACCAACGATACGGAAAGTTTGAAGCTGAGAAGTTTATGGATTCTATATGTCATCTCTGGTGCTACTTCCACCATTTGTCTGCTACTATCAATCATCCACACTCTAGTAAAATCCTGTCAGCAATGCCAACGCGTGGCAGCAGAAGGTAATGACACCCCAAGTCATCATAATGCGTGGGAAAAGATGATTACACATGTAAATCACACTTTTAACAAAAAGATCAATAATTCAAGAGAGACACAGACACAGGTTGTAAGTGATTTTTCTTCCAGACGGGGTCACCAGAGCATGAACGATTCTCATGAGCATCATCTGGAATTGGCTTCTCTAGTACCTCAAAATTCAATGCTCCCTTCTCCATCACCAGAGCTACACATAACAACACACACAGACATAGGAATCACCAACACTTCAAAGTAG 2829 0.4132 MHFLSTNPQAQTMTLLIFYFLMSLVLINGYQDEATNVHNKVISVGAIIDVNSRIGKEQQVAMDIAARSYNSTSKTYKLALYFRNSTKDPIRAITLAEEMINKQKVQVIIGMHRWSEAALVAETGSQAQVPIIAFAEPTITPPLMTKRWPFLVRMTRSGLSYIKCIADIVKAFGWQRVVAIYEDDAYGGDYGMLALLSEALQNVSSLIDYHLVLPPISSLHDPGGFIREELLKLVQTQSRVFIVLQSSLEMAIHLFKEASKMGLVDKESAWILPESITNLLDSVNKSAISYMDGALGIKTYYSEISSEYQDFEAQFRRTFWSKNVEEDNRYPGFYALQAYDSIKIVTQAVDIMTSRNTTNPKKLLREILSTSFLGLSGHIQFEDGALQKTSILRIVNVAGKSYKELCFWSEQYGFTTNIPTEKGGYSGAGNTECFSGVRWPGNVKHYPKGWNMPTAQNPMKIAVRSRTSFSKFVKVDYDHNGNPANYSGFCIDIFQSVQGLLGYDLPYKYYPIDGTYNDLVQLVYNKSYDAAVGDMTILEERLQYVDFTVPYAESGLSMIVPSKSKESAWMFTKPFTWELWMVTGSILIYTMLVVWYLERESNPEFHGNWKTQISTALWFTFSSLFFAHREKMHSNLTRMVMVSWLLLVLILTSCYTASLSSMLTVKKLQPNVTDIEWLKRNNMKIGCDGDSFVRSFLEKVEGFHPENIIHVTDEYKYDDAFQNNTIAAAFLELPYEKVFITEYCDRYTGSTPRTRFGGLGFMFQKGSPVTRDVSKAILHLSERAELKKLEEKWLTTSSKCSSDTNDTESLKLRSLWILYVISGATSTICLLLSIIHTLVKSCQQCQRVAAEGNDTPSHHNAWEKMITHVNHTFNKKINNSRETQTQVVSDFSSRRGHQSMNDSHEHHLELASLVPQNSMLPSPSPELHITTHTDIGITNTSK* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1861 942 SUPERFAMILY Periplasmic binding protein-like I 38 450 IPR028082 -
Pvu6g1861 942 Pfam Bacterial extracellular solute-binding proteins, family 3 484 795 IPR001638 -
Pvu6g1861 942 PIRSF IGluLR_plant 9 924 IPR017103 -
Pvu6g1861 942 Pfam Receptor family ligand binding region 59 396 IPR001828 -
Pvu6g1861 942 CDD PBP1_GABAb_receptor_plant 43 418 IPR044440 -
Pvu6g1861 942 Gene3D - 568 700 - -
Pvu6g1861 942 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 915 - -
Pvu6g1861 942 SMART GluR_14 460 796 IPR001320 GO:0015276|GO:0016020
Pvu6g1861 942 Gene3D - 36 161 - -
Pvu6g1861 942 Gene3D - 453 567 - -
Pvu6g1861 942 CDD GluR_Plant 457 794 - -
Pvu6g1861 942 Pfam Ligand-gated ion channel 796 823 IPR001320 GO:0015276|GO:0016020
Pvu6g1861 942 Gene3D - 162 339 - -
Pvu6g1861 942 PANTHER GLUTAMATE RECEPTOR 3.4 22 915 - -
Pvu6g1861 942 SUPERFAMILY Periplasmic binding protein-like II 437 795 - -
Pvu6g1861 942 Gene3D - 737 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1861 Pvu-Chr6 28918794 28922534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1861 7 838 Ion Channels AT2G29120 33.295 2.67e-147 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1861 - - gmx:100818619 1524.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1861 6 28918794 28922534 Pvu6g1861 6 28918794 28922534 ECH