Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1856 ATGGGCTCTAAGGAAAAGCATGACGAGGAATCACTTAGTGTAGGCCTGAAGTTGATGCTAGCAGCAGCTCTCTCTTTACTTAGTATGATCTTGTTCATCATCATCTTCCATTTCAGTGTCAAATATTTCATCAGACGCCAACAGAGGAGACGCCAAAACGACCTTCTTTACCAGATCACCACTCAAATAACACCAATTGATGTGAGTTCTGTGGAGCCATGCAACTCTGGACTGGAACCTTCGATCATAGCCTCTCTGCCTAAACTTTTGTACAGCCAAACGGAACAGTTCAAGAAAGGTGAAGTCATAGAGTGTTCGGTTTGCCTTGCCACTATTACAGAGGATGCAGTTACTAGAGTGCTACCAAATTGTAAGCACATTTTTCATGTTGATTGTGTCGATAAATGGTTTAGTTCTAACACCACATGCCCAATTTGCCGCACTGTGGCTGACCCAAAGGTGGCACCAGAAGAACATGATCATTTGGCCACAAGGGTCCACCAAGTGCAACCCACAGCACCACCTGCTGTGAGTGGTGATGAGGTAGAAGATGGTGATGAAATGGAGAAGGTGGGGTGTTCTGGTTTGAGAATAGGATCTTTCCATAGGATGGTCAGTAACAGGGAAAGATCAGGGAGGACTCAAAGTTGTGATGAATCTACAATAGATATAGGAAGACACTGA 684 0.4444 MGSKEKHDEESLSVGLKLMLAAALSLLSMILFIIIFHFSVKYFIRRQQRRRQNDLLYQITTQITPIDVSSVEPCNSGLEPSIIASLPKLLYSQTEQFKKGEVIECSVCLATITEDAVTRVLPNCKHIFHVDCVDKWFSSNTTCPICRTVADPKVAPEEHDHLATRVHQVQPTAPPAVSGDEVEDGDEMEKVGCSGLRIGSFHRMVSNRERSGRTQSCDESTIDIGRH* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1856 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 152 IPR013083 -
Pvu6g1856 227 SMART ring_2 105 146 IPR001841 -
Pvu6g1856 227 Pfam Ring finger domain 104 147 IPR001841 -
Pvu6g1856 227 PANTHER RING FINGER DOMAIN-CONTAINING 1 220 - -
Pvu6g1856 227 MobiDBLite consensus disorder prediction 206 227 - -
Pvu6g1856 227 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Pvu6g1856 227 SUPERFAMILY RING/U-box 87 154 - -
Pvu6g1856 227 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1856 Pvu-Chr6 28885417 28886368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1856 17 227 C3H Transcription Factor Family AT2G42360 31.651 2.19e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1856 K19038 - gmx:100786701 333.183