Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1818 ATGTCAGAAGGACATGAGATTCATAGCAATGAGGAAGCTTCATCGGGATGTTCCCAGAAATGCTCTTCATTTGACTTGAATACTGAAGCTTGCAGTGACGATAACACCAACGGTAGTACAGAAGAGGGCTATGAGCTCACAACCGACGAGAATAATATTGAGAAAGTAAAGGATGAGGGAACTTCAGCAAATAATGGAAGTAGCATTTCAAGAGAAGGCAATGAGAGAAGAGGAACGGTGAGACAATATGTTAGATCCAAGATGCCTCGGCTTCGGTGGACTCCTGAACTTCATCATTCATTTATGCATGCTGTTGAAAGACTTGGTGGACAAGAGAGAGCAACACCCAAGTTGGTGCTTCAGCTAATGAATGTGGAAGGACTTAGCATTGCTCACGTCAAGAGCCACTTGCAGATGTATCGAAGCAAGAAACTTGACGAGGTTGGGCAAGTACTGAGTCAAAGGTCGAACCAAAGGGTACGATCTGTGATGCTTCATCAGTCCATGAGTCCTCAACAACATCTTAAGATGGGGAATGGTGGAATCATTCTGGCAACTCAATTCGACAAACATTGTCATTTCCCAAGTCTCATGCAGACCCCCTTCCCCCTATCACGTTCCCATGCAAATGACACCAATTCAAGGCACCAGCAATGGTACATCAATCATCAACATTTTAGAAAACCAATAGCTTCGGGCCAAATTCAACCAAAGGATACACCTACGAGACCAAGCCAACTGCTTGATGAGAAAAGGTGGCTTCCCTTAGAAATTATAAACAATCATCAATCCAAGTTTCAAAAGTTACCTGCCATTGTTGCTCCTAAAACTGGATCACACGCTGTTCAACCAACTGAGTGGAGCTTTGTGAACAACACAAGCGTCACAGAATATATATCTAACAAACCCAATGAACCTCGCAACTATTCCAGCAGTTTAAAGCTAGAATTTGATCCCCCATTTCGGATTAAGAAAGACGAGCAACAATTACCTGATTTGCAACTGAGTTTGAGTTACACAGTTGCAAGCGATGGTGGCAAGATGAATCATTACAGAGAAACCCAGGAAATTAGCACCAAGCTTTCACTTTCTTAA 1095 0.4283 MSEGHEIHSNEEASSGCSQKCSSFDLNTEACSDDNTNGSTEEGYELTTDENNIEKVKDEGTSANNGSSISREGNERRGTVRQYVRSKMPRLRWTPELHHSFMHAVERLGGQERATPKLVLQLMNVEGLSIAHVKSHLQMYRSKKLDEVGQVLSQRSNQRVRSVMLHQSMSPQQHLKMGNGGIILATQFDKHCHFPSLMQTPFPLSRSHANDTNSRHQQWYINHQHFRKPIASGQIQPKDTPTRPSQLLDEKRWLPLEIINNHQSKFQKLPAIVAPKTGSHAVQPTEWSFVNNTSVTEYISNKPNEPRNYSSSLKLEFDPPFRIKKDEQQLPDLQLSLSYTVASDGGKMNHYRETQEISTKLSLS* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1818 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 227 IPR044848 GO:0003700
Pvu6g1818 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 234 364 IPR044848 GO:0003700
Pvu6g1818 364 MobiDBLite consensus disorder prediction 30 46 - -
Pvu6g1818 364 MobiDBLite consensus disorder prediction 58 73 - -
Pvu6g1818 364 Gene3D - 88 145 - -
Pvu6g1818 364 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 89 144 IPR006447 GO:0003677
Pvu6g1818 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 145 IPR017930 -
Pvu6g1818 364 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 227 - -
Pvu6g1818 364 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 234 364 - -
Pvu6g1818 364 Pfam Myb-like DNA-binding domain 91 141 IPR001005 -
Pvu6g1818 364 SUPERFAMILY Homeodomain-like 87 143 IPR009057 -
Pvu6g1818 364 MobiDBLite consensus disorder prediction 30 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1818 Pvu-Chr6 28579128 28583690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1818 80 146 G2-like Transcription Factor Family AT2G42660 79.104 4.14e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu6g1818 Myb_DNA-binding 3.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1818 - - gmx:102669757 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1818 6 28579128 28583690 Pvu6g1818 6 28579128 28583690 ECH
Pvu6g1818 6 28579128 28583690 Pvu2g2461 2 40525230 40533557 ECH
Pvu2g2461 2 40525230 40533557 Pvu6g1818 6 28579128 28583690 PCT