Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1813 ATGGCCGACGTCGTTTCGAAGACCCCTCCCAACACCACCACCACCCCCACGAGCCACCACAAGAAGGAGTCATCGAACCTTCTATTGGGTCGTTTCGAGATTGGGAAGCTCCTTGGTCATGGAACCTTTGCGAAGGTCTACTACGCGCGGAACCTGAAAACCGGCGAAGGCGTGGCCATCAAGGTAATCGACAAGGAGAAGATTCTGAAGGGAGGTTTGGTGGCACACATAAAGCGCGAGATCTCCATCCTCCGCCGCGTGCGCCACCCCAACATCGTGCAACTCTTCGAAGTCATGGCCACCAAGAGCAAGATCTATTTCGTAATGGAATACGTTCGCGGGGGCGAGCTTTTCAACAAGGTCGCAAAAGGAAGGCTCAAAGAAGAGGTTGCCAGGAAGTACTTTCAGCAGTTAATCTCCGCGGTGGGGTTCTGCCACGCCAGAGGGGTGTACCATAGAGATCTCAAACCTGAAAATCTCTTACTTGATGAGAATGGTAATCTTAAGGTGTCTGATTTCGGGTTGAGTGCGGTTTCTGATCAAATCCGACAGGATGGGTTGTTCCACACATTTTGTGGGACACCTGCGTATGTTGCTCCCGAGGTTTTGGCGAGGAAAGGATACGATGGTGCTAAGGTGGATCTCTGGTCTTGTGGGGTTGTGTTGTTTGTGTTGATGGCGGGGTATTTGCCCTTTCACGACCAGAATGTTATGGCAATGTATAAGAAGATTTACAGAGGGGAGTTTCGGTGTCCCAGGTGGTTTTCTCCTGATTTGTCCAGGCTTCTCACGAAGCTTCTTGACACAAAGCCTGAAACCCGGATTGCGATTCCTGAGATTATGGAGAACAAGTGGTTCAAGAAAGGGTTCAAGCAGATCAAGTTTTATGTTGAGGATGATAGGCTTTGCAATGTGGATGATGATGTGCTTTTGGACAATGATGACGATGTTGCTTCTGTTGCTTCTTTTTCGGATTACTCGATTTCAGAGTCTGATACGGAGGTTGATTTTAGGAGAAAGAATACTCCTTTGCCCAGACCTCCTAGTTTGAATGCTTTTGACATTATATCTTTCTCCCCTGGATTTGATCTCTCCGGGTTGTTTGAGGAGAAGGAGGATGAGACCAGGTTTGTGACTGCTGCACCGGTTAACATGATTATTTCCAAGTTGGAGGAGATTGCCCAGTTGGTCAGTTTTACAGTGAGGAAGAAGGATTGCAGGGTGAGTTTGGAGGGTACCCGAGAGGGGGTGAAGGGGCCTTTGACTATTGCTGCTGAGATTTTTGAGTTGACACCTTCATTGGTTGTGGTGGAGGTGAAGAAAAAGGGAGGGGATAGAGCTGAGTATGAGAGGTTTTGTAACAATGAATTGAAGCCTGGGCTGCAGAATTTGATGGTGGAGGAGTCTTCAACTTCTTCAGGCTTGTCTACACCTCAAACTTCCTTACTAGGTGGCCTTTCTGAATCTGTTCCGGACATTTCTTCTGAAATCGGAAGCCCATGCTATGTACCTTCTGATGAGTGA 1524 0.481 MADVVSKTPPNTTTTPTSHHKKESSNLLLGRFEIGKLLGHGTFAKVYYARNLKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKSKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSRLLTKLLDTKPETRIAIPEIMENKWFKKGFKQIKFYVEDDRLCNVDDDVLLDNDDDVASVASFSDYSISESDTEVDFRRKNTPLPRPPSLNAFDIISFSPGFDLSGLFEEKEDETRFVTAAPVNMIISKLEEIAQLVSFTVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYERFCNNELKPGLQNLMVEESSTSSGLSTPQTSLLGGLSESVPDISSEIGSPCYVPSDE* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1813 507 ProSiteProfiles Protein kinase domain profile. 32 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1813 507 SMART serkin_6 32 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1813 507 CDD STKc_SnRK3 31 285 - -
Pvu6g1813 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Pvu6g1813 507 ProSiteProfiles NAF domain profile. 345 369 IPR018451 GO:0007165
Pvu6g1813 507 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 7 473 - -
Pvu6g1813 507 SUPERFAMILY Protein kinase-like (PK-like) 28 287 IPR011009 -
Pvu6g1813 507 Pfam NAF domain 347 403 IPR004041 GO:0007165
Pvu6g1813 507 Gene3D Transferase(Phosphotransferase) domain 1 22 337 - -
Pvu6g1813 507 MobiDBLite consensus disorder prediction 1 23 - -
Pvu6g1813 507 MobiDBLite consensus disorder prediction 487 507 - -
Pvu6g1813 507 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Pvu6g1813 507 Gene3D Kinase associated domain 1, KA1 345 466 - -
Pvu6g1813 507 CDD CIPK_C 351 462 - -
Pvu6g1813 507 PANTHER - 7 473 - -
Pvu6g1813 507 Pfam Protein kinase domain 32 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1813 Pvu-Chr6 28520973 28523220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1813 14 468 CBL-interacting serine-threonine protein kinases AT4G18700 81.004 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pvu6g1813 Pkinase 3.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1813 - - gmx:100790133 872.078