Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1812 ATGAAGCCCCTTCCCACGTTCTTCATTCTCCTTTTACTAGTTGCGCTCGTGGATTCTAAATATTATTCATGCAAAAATGAAGACCAGGAGCTGGTGTCAAAGGCGTTTCAATCTGTGTCTGGATTCAACTCTTCCTGGTTCCAGAGTGCTTCTAATTGTTCAAATGCTGATGTTATCAAAGGACTCAATCTTTCGTTCAAGAATCTAAGTGGAAGCATTTCGTGGAAGTATCTGAGGAACATGTCCAAGTTGGAGGTTCTAGATCTGTCCGGGAATTTCCTGCAAGGACAGGTACCAAACTGGTTGTGGACAAGTTCAACCTTATTGGTAGTGAACCTTTCCCAGAACAGGTTCGGAGGGAGCATTAACCCCACTTCTCAAAACGGTTCCTTTTCATCGCTGAAAAATCTCAATCTCTCATTCAACAGGTTCACCAACCAGCTTCACCTCTCTGGTTTTTCAAACCTTAAAAGCCTAGACCTTTCGCACAACAACCTTAGAAATTTACCTTTGGGCTTCCAAAACCTCACCAATCTACACCAACTTAATCTCTCCAACTGCAACATTAAAGGCAGCGTAAAACCCATTTCTTCCCTAACCTCACTCTCCTTCTTGGACCTTTCAAACAACTCTTTGAATGGTAGCTTCCCCTCGGATTTCCCTCCCCTGAACACCATAAAATTCTTGAACATCTCCCACAACAACTTCAAAGCATCCGCCGCATTAGACAGATTCAGAAAGTTCGGGAAGTCGGCGTTCATTCACGCTGGCCACAACTTCAGCTACACCGCATCCAAAACGCCAAAGCTAGGTGCAACCTCAACATCAGCTTCAATTTCAAATCCACCACACGAGCAGTCCCACCACATTCAGGCGGAGAAGAAGAGGCGGAGAGAAAAACAAAAGTCAAAACAGAAACCGAGAAGAATGATTGCAGGCTTGTCGTGTGGCTCGACACTGGTGGTTGTCGGATTGTGCATGTGCGTGGTGTGGCGTTGCAGAAGGAAGAGGCAATGGGCGAAAAGGAACAAGTGGGCGATCTCGAAGCCGGTCCCAGTGAGCATGAAGATGGAAAAGTCGGGACCGTTCGCGTTCGAGACAGAGTCAGGGACATCATGGGTGGCTGACCTGAAAGAACCCTCTTCCGCACCCGTGGTGATGTTCGAGAAGCCTCTCATGAACCTCACCTTCGTGGACCTAATAGCTGCCACGTCACACTTTGGCAAAGACTCTCTCCTTGCTGAGGGAAGGTGTGGGCCCGTGTACCGCGCTGTCTTAACAGGAGACATCCACGTGGCAATCAAAGTCATCGAAAACGCCAGAGACGTCCATCATGATGACGCTGTCGCTCTCTTCGTTGACCTTTCCCAACTGAAACACCCCAATCTCTTGCCCCTCTCTGGTTACTGTATTGCAGGGAGGGAGAAGCTGGTGTTGTACGAATTTATGTCCAACGGAGATTTGGGTAGGTGGTTGCAGGAGCTACCAGCGGGGGAGACTAACGTCGAGGATTGGAGTGGTGACACGTGGGAGATTGTTCAAAACGGCGCCGTTTCTCGAGCCTCGCCCCCGGAAAAGATGGCCTGGCCCTTACGCCACCGTATTGCGGTGGGCGTGGCGCGTGGCTTGGCGTTTCTGCACCACGCGGGCTCCAGGCCCGTCGTGCACGGCCATCTCGTCACCTCGAACGTCCTTATCGGCGACGACTTCGAGCCGCGAATCGCGGATTTCGGGTTCCGGAAATTCGGAAGGGAGAGCGCCGCCGCCGCGGCGAATTGCTCGACAGAGACGGATGTTTACTGCTTCGGTGTGGTGCTGATGGAGCTTCTGACGGGGAGGGGCGGCACGGCGGAGACGGTGGTTTGGGTGAGGAAGGCAGTGAGGGAGGGACACGCGCTGAGGGCGTTGGATGAGAGGCTCAAACTCAGCGGCGGAGGCGACTCGGAGAATGAAATGGTGGAGAGCCTCCGAGTGGCGTATTTGTGTACGGCGGAGTCACCCGGGAAGAGGCCCACCATGCAGCAGGTATTGGGCCTGCTGAAAGACATTCACCCGAGTCACGGAGTCGACTGA 2073 0.5215 MKPLPTFFILLLLVALVDSKYYSCKNEDQELVSKAFQSVSGFNSSWFQSASNCSNADVIKGLNLSFKNLSGSISWKYLRNMSKLEVLDLSGNFLQGQVPNWLWTSSTLLVVNLSQNRFGGSINPTSQNGSFSSLKNLNLSFNRFTNQLHLSGFSNLKSLDLSHNNLRNLPLGFQNLTNLHQLNLSNCNIKGSVKPISSLTSLSFLDLSNNSLNGSFPSDFPPLNTIKFLNISHNNFKASAALDRFRKFGKSAFIHAGHNFSYTASKTPKLGATSTSASISNPPHEQSHHIQAEKKRRREKQKSKQKPRRMIAGLSCGSTLVVVGLCMCVVWRCRRKRQWAKRNKWAISKPVPVSMKMEKSGPFAFETESGTSWVADLKEPSSAPVVMFEKPLMNLTFVDLIAATSHFGKDSLLAEGRCGPVYRAVLTGDIHVAIKVIENARDVHHDDAVALFVDLSQLKHPNLLPLSGYCIAGREKLVLYEFMSNGDLGRWLQELPAGETNVEDWSGDTWEIVQNGAVSRASPPEKMAWPLRHRIAVGVARGLAFLHHAGSRPVVHGHLVTSNVLIGDDFEPRIADFGFRKFGRESAAAAANCSTETDVYCFGVVLMELLTGRGGTAETVVWVRKAVREGHALRALDERLKLSGGGDSENEMVESLRVAYLCTAESPGKRPTMQQVLGLLKDIHPSHGVD* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1812 690 MobiDBLite consensus disorder prediction 271 286 - -
Pvu6g1812 690 ProSiteProfiles Leucine-rich repeat profile. 155 177 IPR001611 GO:0005515
Pvu6g1812 690 Gene3D Ribonuclease Inhibitor 128 256 IPR032675 -
Pvu6g1812 690 ProSiteProfiles Protein kinase domain profile. 407 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1812 690 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 4 690 - -
Pvu6g1812 690 PANTHER KINASE, PUTATIVE-RELATED 4 690 - -
Pvu6g1812 690 PRINTS Leucine-rich repeat signature 156 169 - -
Pvu6g1812 690 PRINTS Leucine-rich repeat signature 199 212 - -
Pvu6g1812 690 SUPERFAMILY Protein kinase-like (PK-like) 384 680 IPR011009 -
Pvu6g1812 690 MobiDBLite consensus disorder prediction 293 307 - -
Pvu6g1812 690 Gene3D Ribonuclease Inhibitor 30 127 IPR032675 -
Pvu6g1812 690 Pfam Leucine Rich Repeat 155 176 IPR001611 GO:0005515
Pvu6g1812 690 Pfam Leucine Rich Repeat 83 101 IPR001611 GO:0005515
Pvu6g1812 690 Pfam Protein tyrosine and serine/threonine kinase 411 581 IPR001245 GO:0004672|GO:0006468
Pvu6g1812 690 SMART LRR_typ_2 153 175 IPR003591 -
Pvu6g1812 690 SMART LRR_typ_2 199 222 IPR003591 -
Pvu6g1812 690 SMART LRR_typ_2 81 105 IPR003591 -
Pvu6g1812 690 Gene3D Phosphorylase Kinase; domain 1 367 482 - -
Pvu6g1812 690 SUPERFAMILY L domain-like 52 239 - -
Pvu6g1812 690 MobiDBLite consensus disorder prediction 271 309 - -
Pvu6g1812 690 Gene3D Transferase(Phosphotransferase) domain 1 513 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1812 Pvu-Chr6 28507955 28511269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1812 58 683 Receptor kinase-like Gene Family AT5G07280 30.526 1.36e-70 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Pvu6g1812 PK_Tyr_Ser-Thr 3.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1812 - - gmx:100778920 1143.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2464 2 40558650 40561863 Pvu6g1812 6 28507955 28511269 PCT