Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1808 ATGGAAGATGCCAATGTGGGTGCTTGGCTCGTTTCCCTCTTTCTGTGTTACTGGGTGCTTCTTGTTGAGGGCACTGATAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTGCTTTGATGTCCTTGAAGAGTAAGATGTATGGTGAGTTTCATGTTATGGATGGTTGGGATATTAATTCGGTTGACCCTTGCACTTGGTACATGGTTGGTTGCTCTGCCGAGGGCTATGTCGTTTCCCTGGAAATGGCCAGTGCGGGTTTATCCGGAACTATTTCCTCAGGAATTGGAAATTTGAGCCACCTCCATACATTGCGGCTCAGCAAAAATAAACTATCTGGACAGATCCCTCAGCTAGTTGCTAATCTCACTGAACTTTCATTCTTGGACTTGTCATTCAATAATCTCAGCGGTCCCACTCCAAAAATTTTAGCGAAAGGTTATAGTATTTCAGGAAACAGCTTCCTCTGCACCTCTCCCTCTCAGATTTGTATGGGCTTCTCAAAACCAGTTAATGATACAGGGTCATCTCAGTCGACTGGTGGTCATCACCATAGGGTGCTTGCTGTTGTTATTGGCTTTAGTTGCACATTTATAATTTCAGTGGTGCTTCTTGTCTTTTGGTTGCATTGGTACAGATCAAACATTCTCTACACATCTTATGTGGAGCAAGATTGTGAATTTGATATTGGACATCTGAAGAGGTTCTCCTTCCGTGAATTGCAAATTGCTACTGGAAATTTCAATTCAAAAAATATCCTAGGGCAAGGTGGTTTTGGTGTTGTCTACAAAGGATGCCTTGCAAATAAAATGTTAGTGGCAGTAAAGAGGTTGAAAGATCCCAACTATACTGGAGAAGTGCAGTTTCAAACAGAAGTTGAGATGATTGGCTTGGCCGTGCATCGAAACCTCTTGCGTCTTTATGGATTCTGTTTGACACCGGATGAGAGGTTACTTGTTTATCCTTACATGCCCAATGGCAGTGTTGCTGATCGCTTGAGAGAGACTTGCCGCGAAAAGCCATCATTGGACTGGAACAGGCGAATGCGCGTTGCTCTTGGGGCAGCACGTGGGCTTCTATACCTGCATGAACAATGCAATCCAAAAATAATCCATAGGGATGTTAAGGCTGCAAACATTTTGCTAGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACACGTAACTACTGCAGTCCGAGGTACAGTAGGTCACATTGCTCCAGAGTATCTCTCAACTGGACAGTCTTCTGAGAAAACAGATGTTTTTGGATTTGGCATATTACTTTTGGAGATCATAACAGGACACAAGGCACTTGATGCTGGAAATGCTCAGGTCCAAAAGGGAATGATTCTTGATTGGGTTAGAACCTTATCTGAGGAGAAGCGGCTGGAAGTGTTAGTGGATAGGGATCTGAGGGGATGTTTTGATCCAGTAGAGTTAGAGAAAGCAGTGGATTTGTCTCTGCAGTGTACTCAGTCACTTCCCACTTTGAGGCCAAAGATGTCAGAAGTTCTGAAGATTCTAGAAGGTCTGGTAGGACAGTTAGTGCGGGCAGAGGAGTCACAAGGGGGAACTAACCTATATGGTGAAAGGACTTGCAGTTTCTCACAAAATTATAGTGATGTTCATGAAGAACCTTCCTTTATTATTGAAGCCATTGAGCTTTCTGGACCTCGGTGA 1719 0.438 MEDANVGAWLVSLFLCYWVLLVEGTDSLLSPKGVNYEVAALMSLKSKMYGEFHVMDGWDINSVDPCTWYMVGCSAEGYVVSLEMASAGLSGTISSGIGNLSHLHTLRLSKNKLSGQIPQLVANLTELSFLDLSFNNLSGPTPKILAKGYSISGNSFLCTSPSQICMGFSKPVNDTGSSQSTGGHHHRVLAVVIGFSCTFIISVVLLVFWLHWYRSNILYTSYVEQDCEFDIGHLKRFSFRELQIATGNFNSKNILGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCLTPDERLLVYPYMPNGSVADRLRETCREKPSLDWNRRMRVALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLEIITGHKALDAGNAQVQKGMILDWVRTLSEEKRLEVLVDRDLRGCFDPVELEKAVDLSLQCTQSLPTLRPKMSEVLKILEGLVGQLVRAEESQGGTNLYGERTCSFSQNYSDVHEEPSFIIEAIELSGPR* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1808 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 371 383 IPR008271 GO:0004672|GO:0006468
Pvu6g1808 572 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 106 572 - -
Pvu6g1808 572 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 108 - -
Pvu6g1808 572 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 108 - -
Pvu6g1808 572 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 106 572 - -
Pvu6g1808 572 SUPERFAMILY Protein kinase-like (PK-like) 232 522 IPR011009 -
Pvu6g1808 572 Gene3D Phosphorylase Kinase; domain 1 219 324 - -
Pvu6g1808 572 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Pvu6g1808 572 Pfam Protein kinase domain 250 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1808 572 Gene3D Transferase(Phosphotransferase) domain 1 325 531 - -
Pvu6g1808 572 SMART serkin_6 249 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1808 572 Gene3D Ribonuclease Inhibitor 33 166 IPR032675 -
Pvu6g1808 572 SUPERFAMILY L domain-like 36 147 - -
Pvu6g1808 572 ProSiteProfiles Protein kinase domain profile. 249 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1808 572 ProSitePatterns Protein kinases ATP-binding region signature. 255 277 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1808 Pvu-Chr6 28483156 28487685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1808 42 572 Receptor kinase-like Gene Family AT5G45780 64.888 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pvu6g1808 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1808 - - gmx:100810610 1025.39