Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1807 ATGGATCAAAACAGAAACGAAGAAAGAGGTGAGATACTGGGTCCTGTTCATGAAGGGGTAGATGGGAATTTGAGTCATTTGGTTGAAGGGGTAGTTATTCATGCCGTAGATGGGAACAGCTTGGGTGACAGAGTTGGTGATGGCGGAGAAGCTGGAACTTCAGTAGAGGTGGGTAAAGATTTGGGATCTGAAAAGGAGCTAAAGGAGGGCCTTGAGGAAGTTAAGGGTCGGGACAAGTATGATCAAGAAAATATCAGTGATGATAAATTACTTGGGGTTGATCAGGGAACCAGTTATAATTCAAACCATTTGGTTAATCAGCAAGTGATTGAAACTGTTGTTGTAATTGAGTCTTTTGAGACTGAGTATGTCAATGAGAATAATAGGAAATTGGAAGCAAAAGTTAACGAATCGGGTACATTCATGAAAGTACCAGAAGGGACGTCTGAAACTGATAAAAATTCATGTGTGATTGATATAAAATGCAGCAGCCTGAAAAAGTTTTCTGAGAATTCTGAAGGCGGACAGATTTGTAGGATTTGCCATCTGCCTTCTGTGCAGTCATTGGATGAAAGTGAAACAACTGTTGGCCCTGCTGCTAGTAGTTCTACGAGTTCTGATTTGATTCAGCTTGGGTGTGCATGCAAAGATGAGCTAGGCATTGCCCATCTTCATTGTGCTGAGGCGTGGTTCAAGCTTAAGGGGAACAGGTTATGTGAAATATGTAGTGAAACTGCAACAAATGTTTCGGGTGTTAGTAATTATGAATTTTTGGAAAAGTGGAATGAAAGAAGGTTCTTGGAAAACGGTGGCAACTCTTCCCGCAGGTTTGGTGGATGCTGTCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCATTTGTTCTGCCATGGTTTTTTCGTGTAAATATGTTCTAG 930 0.4151 MDQNRNEERGEILGPVHEGVDGNLSHLVEGVVIHAVDGNSLGDRVGDGGEAGTSVEVGKDLGSEKELKEGLEEVKGRDKYDQENISDDKLLGVDQGTSYNSNHLVNQQVIETVVVIESFETEYVNENNRKLEAKVNESGTFMKVPEGTSETDKNSCVIDIKCSSLKKFSENSEGGQICRICHLPSVQSLDESETTVGPAASSSTSSDLIQLGCACKDELGIAHLHCAEAWFKLKGNRLCEICSETATNVSGVSNYEFLEKWNERRFLENGGNSSRRFGGCCRGQPFCNFLMACLVIAFVLPWFFRVNMF* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1807 309 SMART ringv_2 177 243 IPR011016 GO:0008270
Pvu6g1807 309 SUPERFAMILY RING/U-box 175 245 - -
Pvu6g1807 309 PANTHER ZINC FINGER, RING-CH-TYPE 1 309 - -
Pvu6g1807 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 254 IPR013083 -
Pvu6g1807 309 Pfam RING-variant domain 205 242 IPR011016 GO:0008270
Pvu6g1807 309 ProSiteProfiles Zinc finger RING-CH-type profile. 170 249 IPR011016 GO:0008270
Pvu6g1807 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1807 Pvu-Chr6 28475650 28478831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1807 129 308 C3H Transcription Factor Family AT5G05830 36.216 1.52e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1807 - - vra:106775190 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1807 6 28475650 28478831 Pvu6g1807 6 28475650 28478831 ECH
Pvu2g2467 2 40622682 40626399 Pvu6g1807 6 28475650 28478831 PCT