Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1793 ATGACTAGGGCTGTCCGTAGTAGGGTACTTAAAGATGCCAATGGTGATATTAGTGATCATCTACGCAACCACATCCATTTAACAAATTGCATTCATCTGAAGAACCATATGCACAAGAACAGCCCCATTCTGGCTGATAGGTCAATCATGCGAGACCTTGTTGTGCTGCAAAGATCGCGGTCTCTTCGAGACCCTTCTGCAAGTCCTCCATCATGGCACTCGCCTTCAGTGGTTGACATGCTTTTCAAAAGAGTCGAAAATGATGCAGCGTCCCAAGGGGGAAGAAGGTCTGTAGGTGTTGAGAGAAGGAAGGAAGGGAGAAGATTATCTGGAACTTCACCACCCTTGGTGAGTATAGCTTCATCAAGAGTTGCCCCAGGTGAGATTGGTAGGGGTAATGATGGGATAATGGCACCAAGTGAACGTAGCAGCAGGAGTGGAGTGGGAGATGGCAGGAAAGTTGGGAGAGAAGAATCTGGTAGGAGGAATGAAAGGCCTGACTTCTTGGATGTTAATCAAGAGGACCCTCTCAGTCAAGCTGCCAAAAGTTTGGCTGAAGATGTTATTTCCAGGCATTCCGAGTCTAAAGATAGAAAGAGCAAACAGAGGGGGAAGAATGTTCGAGATGCTCAAGTGAAGACCCTTTCTGAGCAGCTGAATGACGTTCCTTTGGATAGTGATGATTTAGCATCGACAAACATTCATTTTCGCGGAAGGTTTCCTAGACAGGAGAAAATTATTGAGGAGGCAGATTCCCGGTTGCGCAGTAATGGCAGTGGACTGAATAGGGGGAAAAGACGTAAGTTTCGAAGTGCCCGAAGAACACGTGTTGCCACGACATCAAGAGAAATTGGAGCTGAGCATGAACTCTCTGTGGCTTCCAACTCAATAGCTCAGGCTTCAGCTCATCAGAAATATCACTTGGAGGAGGCGGATGAGTTTGCAGATGAAAATGTTACCAGGGCTCCAAAAAATGGGTGTGGCATTCCGTGGAATTGGTCCAGAATTCATCATAGGGGTAAAACATTCCTTGACATGGCTGGAAGAAGTTTGTCTTGTGGTTTATCTGACTCTAGGTTGAAGAAAGGGGCATTTGCTGCCAATGGAAGACATATTTCTGAGATGCCAGTGGCATCTGAACACTCCAGCTCATATACTAAGTCTGATGCAGAGGCACTGCCTTTACTAGTTGAGGCATCTGTATCTCACGCAAGCACTGAAAATGCTTGTTGGGATCATGACTATTCTGGGGAACTAGGTCTTTTTGGTGATAACTTATTCAAGCGTGATGTTGATTCTGATCTTGCTTCTGAAGCTAGATCTGGTGATCAGCGTAAGTTGAGAGGGAATCGTCACAGTCGACACCAAAGTTTGACACAGAAGTACATGCCTCGAACCTTCAGAGATATGGTTGGGCAGAATTTAGTGGCACAAGCTCTTTCTAATGCAGTAATAAGAAGAAAAGTTGGGTTGTTGTATGTGTTTTATGGTCCCCATGGAACCGGAAAAACTTCTTGTGCCCGCATCTTTGCCAGAGCTCTGAATTGTAATTCTTCAGAACACCCCAAACCTTGTGGATTTTGCAATTATTGCATAGCACATGATATGGGCAAAAGTAGAAATATAAAGGAAGTAGGTCCAGTTAGCAATTTTGATTTTGAGAGCATCATGGACTTACTTGACAATATGATTGTTTCTCAGCTTCCATCACATTACAGAGTGTTTATTTTTGATGACTGTGATACTCTGTCAACAGATTGTTGGAATGCCATATCGAAGGTCATTGACCGAGCACCTAGACGTCTCGTTTTTATCCTTGTCTGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTGAAGGATGCAGATATTATACATACTCTGCAGTGGATTGCAACCAAAGAAGGTCTAGAAATTGAGAAGGATGCCCTGAAACTAATTGCATCAAGGTCAGATGGATCTATGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTACTTGGACAGAGAATATCCGTTCCTCTTGTTCAGGAACTGGTAGGGCTAATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACAGTGAAGAATTTGAGAGTGATAATGGAAACCGGTGTGGAGCCATTGGCTTTAATGTCACAACTTGCTACAGTAATTACAGATATACTCGCTGGGACCTATGATTTCAATAAAGAAAGGCGAAGAAGGAAGTTCTTCCGGAGACAACCACTGTCCAAAGAAGACATGGAAAAGCTGCGCCAAGCTCTGAAAACTTTATCTGAGGCTGAGAAGCAATTGAGGATGTCCAATGACAAGCTAACATGGTTGACGGCTGCTTTACTTCAGCTTGCTCCGGACCAGCAATATGTGTTGCCAACTTCATCCGATAATAGTTTCAACCATAGTCCATTCACTCTAAAAGATGCAGATGCGAGAGAAGCTGCTAGACTGACTGTTAACCCCAATCCCGTTGACATTCCTAACAAAGCAAGACGATTATCGATGGATGCTAGAATTGAAAATTTCCATGCTGGAAGCTCAGCAGATGGTATGACAAGGGGTCTTGGTTCTGAGAATAAGCGACATAGTATGTCTGGTTTTACTCCTCAACATACTCATTTACAAGCCACTGATAAAATTAAGATGAATGAGAGGCAGATTTTGGGTAAAAACCGGAAAGAAATTGGAGAGATATGGTTAGAGGTGCTTGATAGAATACAAGTTACTGGTCTGAAGGAGTTTCTGTTTAAAGAAGGCAAGCTGATCTCTGTTAGTTTTGGGGCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCATTTGACCAAATCTACTGCCGAGAAGTTCAGAGGCCAAATCTTACAAGCATTTGAATCTGTCCTTGGATCATCTATAACAATAGAAATTAGATGTGAGTCAAACAAAGATGCTGGCTCTGCTGTTCAACAACCTCCTACATTGCCTGCTACCAATGATATTTTGTCTCAGATCAGAGACTTTAATGGTGTTAGTTCTCTAGCTCATCCAACATTAGCTGATTCTGTTGAAAAGAGAAGGGGGGAAATTGTAGAAGAAGCATCTTCTCAAGTGGAGCACACGAATAATGAGCAGCAAGTAGATGCTCATGGAACATCTTATAGAAAATTAGAAGGTACAAGTATAGGGCAAACATCAGTTTCCCAAAACAAGCCAATTGTTAAGTCGCAGTTAGACCAAAGAAAGCTTATGGAGCAAAATCAAAGTCGAAGTCTTGTTAGAAGCAAAGTATCTCTTGCTCATGTAATCCAGCAAGCAGAAGGCCAGAGAAGTGGGTGGTCAAAACGTAAAGCAGTTTCTATTGCTGAGAAGCTTGAACAGGAGAATTTGAGACTGGAGCCAAGATCAAGAAGCTTGCTATGCTGGAAAGCATCAAGAGCAACTCGGAGAAAGCTGTCACGGTTGAAAATTCGAAGCCGAAAACCACAGGCACTGCTGAATCTGGTCTCATGTGGCAAATGTCTTTCTACAAAATCTCCGAGGTAG 3582 0.4291 MTRAVRSRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDMLFKRVENDAASQGGRRSVGVERRKEGRRLSGTSPPLVSIASSRVAPGEIGRGNDGIMAPSERSSRSGVGDGRKVGREESGRRNERPDFLDVNQEDPLSQAAKSLAEDVISRHSESKDRKSKQRGKNVRDAQVKTLSEQLNDVPLDSDDLASTNIHFRGRFPRQEKIIEEADSRLRSNGSGLNRGKRRKFRSARRTRVATTSREIGAEHELSVASNSIAQASAHQKYHLEEADEFADENVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSLSCGLSDSRLKKGAFAANGRHISEMPVASEHSSSYTKSDAEALPLLVEASVSHASTENACWDHDYSGELGLFGDNLFKRDVDSDLASEARSGDQRKLRGNRHSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVIRRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCIAHDMGKSRNIKEVGPVSNFDFESIMDLLDNMIVSQLPSHYRVFIFDDCDTLSTDCWNAISKVIDRAPRRLVFILVCSSLDVLPHIIISRCQKFFFPKLKDADIIHTLQWIATKEGLEIEKDALKLIASRSDGSMRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFNKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPFTLKDADAREAARLTVNPNPVDIPNKARRLSMDARIENFHAGSSADGMTRGLGSENKRHSMSGFTPQHTHLQATDKIKMNERQILGKNRKEIGEIWLEVLDRIQVTGLKEFLFKEGKLISVSFGAAPTVQLMFSSHLTKSTAEKFRGQILQAFESVLGSSITIEIRCESNKDAGSAVQQPPTLPATNDILSQIRDFNGVSSLAHPTLADSVEKRRGEIVEEASSQVEHTNNEQQVDAHGTSYRKLEGTSIGQTSVSQNKPIVKSQLDQRKLMEQNQSRSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRATRRKLSRLKIRSRKPQALLNLVSCGKCLSTKSPR* 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1793 1193 Pfam DNA polymerase III subunits gamma and tau domain III 686 805 IPR022754 GO:0003887
Pvu6g1793 1193 Pfam DNA polymerase III, delta subunit 473 630 - -
Pvu6g1793 1193 CDD HLD_clamp_pol_III_gamma_tau 630 693 IPR045085 -
Pvu6g1793 1193 Gene3D - 631 693 - -
Pvu6g1793 1193 Gene3D - 448 627 IPR027417 -
Pvu6g1793 1193 MobiDBLite consensus disorder prediction 146 171 - -
Pvu6g1793 1193 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 180 1160 - -
Pvu6g1793 1193 MobiDBLite consensus disorder prediction 438 457 - -
Pvu6g1793 1193 MobiDBLite consensus disorder prediction 255 274 - -
Pvu6g1793 1193 MobiDBLite consensus disorder prediction 88 211 - -
Pvu6g1793 1193 CDD AAA 471 630 - -
Pvu6g1793 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 677 IPR027417 -
Pvu6g1793 1193 Coils Coil 766 793 - -
Pvu6g1793 1193 MobiDBLite consensus disorder prediction 260 274 - -
Pvu6g1793 1193 MobiDBLite consensus disorder prediction 187 210 - -
Pvu6g1793 1193 SMART AAA_5 489 630 IPR003593 -
Pvu6g1793 1193 PANTHER PROTEIN STICHEL-LIKE 3 180 1160 - -
Pvu6g1793 1193 SUPERFAMILY post-AAA+ oligomerization domain-like 701 804 IPR008921 GO:0003677|GO:0006260
Pvu6g1793 1193 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 456 804 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1793 Pvu-Chr6 28363182 28370463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1793 456 754 Core DNA Replication Machinery Family AT1G21690 23.684 3.86e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1793 - - pvu:PHAVU_006G172900g 2291.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1793 6 28363182 28370463 Pvu6g1793 6 28363182 28370463 ECH