Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1782 ATGAAGTGGGGAGGAAGAAAGCATTCTTTAACTTCCTCTTCTTCTTCTGGCTCTTCCTTCATTTCTCATGCATCTCCTTTCTCTTGGTTATTCAAGTTCAAGAACATGAGAATCAATTCAGAGCCAAGTGCTGCAAAAAGGAAGCAGAAGGCCAAGCCCAGTGGTTCACCAAAATATTTTTGTGAGATTGGAGATAGATGTTGTGTAAAGGATGATGGTGATTTCTGTAGACAACCTTTAAATGAAGAAAGTTGTGAGGATAAGAAGAATAAAGATATTGATGAGAGTGTCTTTCCCTCCTTAAGTTGTCTTGGTGGTACAAGGGATGCCAAGAAGCATGGAAAGAAGGGCACACTGGAGTTAAAGGAGAGGGATATTGGTCAAGGAGAAGAAAGAAAGTGGTTGAATGATGGAAGGGTTTCAAAGGAGATGGATGAGTACAATAGAGAAAAGGAATATGAAAACTTAAGGAGGAGATTTGAGAGCAAAGCGCAAAAGGCTTTTCAAGACCAACTCTTGACATTAGAAAGAGATATGGAGGAACTTAAGTTTGGATCCAGTAAAGCAGTGGAAAAAGATGTGTTGCAATTTGAATCACCTAGAACAATTTGCACCCCAAGAACACATGCTTTTTCCTCTTCAGCATTTTCAAGGAATCCCAACCTTGGAGATATTATAGAAAACTTTGAGAAAACTGAAAAGCAACCTCACAAGAAAATGAGTTCGGTGAGGCAGAACTTGAAACAAACTGAGGAGATGAAGGTAAAGACTAACAGGAAGAAGCAATCACATCAACTCAGCAGAGAACATCAGAGGAGGAAACCAAAGCCGAGCTCTAGGGTCCAAATACGTTCTCCAAGGATGGTTTCTAAGGTTGAAATTTGCAAAATAAAGGCCTTGGAAGACATGAAGAAAGCAAAACTAAAGATGAAGAAAGAAAGGGAGGAGATTGTGGAGGAAATACCAGGATTAGAGAGCTTTGCTGTGATTAAGTCTTCAATAGACCCAAAGCAAGATTTCAGAGATTCAATGATTGAGATGATCATAGAGAATCAGATTATTGATCCAGAAGAAATGGAAGATCTTTTGGCATGCTATCTAACTTTGAATGCAGATGAGTATCATGATCTCATCATAAAAGTGTTCAGGAAGGTATGGTTTGACATGAGCCAAGGTATTTTGGGTATTAAACTAAATATGCAATGTGGTTACTATTGA 1218 0.3875 MKWGGRKHSLTSSSSSGSSFISHASPFSWLFKFKNMRINSEPSAAKRKQKAKPSGSPKYFCEIGDRCCVKDDGDFCRQPLNEESCEDKKNKDIDESVFPSLSCLGGTRDAKKHGKKGTLELKERDIGQGEERKWLNDGRVSKEMDEYNREKEYENLRRRFESKAQKAFQDQLLTLERDMEELKFGSSKAVEKDVLQFESPRTICTPRTHAFSSSAFSRNPNLGDIIENFEKTEKQPHKKMSSVRQNLKQTEEMKVKTNRKKQSHQLSREHQRRKPKPSSRVQIRSPRMVSKVEICKIKALEDMKKAKLKMKKEREEIVEEIPGLESFAVIKSSIDPKQDFRDSMIEMIIENQIIDPEEMEDLLACYLTLNADEYHDLIIKVFRKVWFDMSQGILGIKLNMQCGYY* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1782 405 Coils Coil 240 260 - -
Pvu6g1782 405 MobiDBLite consensus disorder prediction 249 264 - -
Pvu6g1782 405 MobiDBLite consensus disorder prediction 265 280 - -
Pvu6g1782 405 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 10 401 IPR038933 GO:0045892
Pvu6g1782 405 MobiDBLite consensus disorder prediction 7 21 - -
Pvu6g1782 405 MobiDBLite consensus disorder prediction 1 21 - -
Pvu6g1782 405 Pfam Transcriptional repressor, ovate 333 389 IPR006458 -
Pvu6g1782 405 Coils Coil 296 320 - -
Pvu6g1782 405 ProSiteProfiles OVATE domain profile. 329 388 IPR006458 -
Pvu6g1782 405 MobiDBLite consensus disorder prediction 231 283 - -
Pvu6g1782 405 PANTHER TRANSCRIPTION REPRESSOR OFP4 10 401 - -
Pvu6g1782 405 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 327 389 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1782 Pvu-Chr6 28249292 28250509 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Pvu6g1782 Ovate 8.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1782 - - gmx:102666239 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1782 6 28249292 28250509 Pvu6g1782 6 28249292 28250509 ECH
Pvu2g2489 2 40871083 40872569 Pvu6g1782 6 28249292 28250509 PCT