Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1774 ATGTCGGTGGTGGCTGATAATTCAGTAAGCAGTGGAAACCACCAGGTGGCTTTAAATGTGACCGATGATACCCCCAAAAAGTGTGACCATTCAGGCAACCAAGACTGTGTACCTCTTCTGCAGAAGTTGATAGCAGAGGTGGTGGGGACGTACTTTTTGATATTTGCAGGGTGTGCTTCGGTGGTTGTGAACCTTGACAAGGACAAAGTGATAACACAACCTGGGATTTCAATTGTTTGGGGGCTCACTGTTATGGTTTTGGTTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTCACTATTGCTCATGCTTCCACCAAAAGGTTTCCACTGAAGCAGGTACCAGCTTATGTGATAGCTCAGGTGGTTGGATCCACACTAGCTAGTGGAACTCTCAGACTTATATTCAATGGCAAGAATGACCATTTCGCAGGAACACTCCCTGCTGGTTCTGACTTGCAATCTTTTGTGGTGGAATTCATAATCACTTTTTATCTCATGTTTGTCATTTCTGGAGTTGCCACTGATAACAGAGCGATTGGTGAGTTGGCAGGGCTTGCAGTTGGGTCTACGGTACTACTAAATGTGATGTTTGCCGGGCCAATCACAGGGGCATCGATGAATCCAGCAAGAAGCTTAGGGCCTGCAATTGTGCACAATGAGTACAGAGGAATATGGATATATTTGGTGTCACCAACTCTTGGAGCTGTGGCAGGTGCATGGGCCTACAATTTCATAAGATATACAAACAAACCAGTGCGTGAAATCACCAAGAGTGCCTCTTTCCTCAAAAGTGCTCCAGCCGAATAA 822 0.4574 MSVVADNSVSSGNHQVALNVTDDTPKKCDHSGNQDCVPLLQKLIAEVVGTYFLIFAGCASVVVNLDKDKVITQPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAHASTKRFPLKQVPAYVIAQVVGSTLASGTLRLIFNGKNDHFAGTLPAGSDLQSFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHNEYRGIWIYLVSPTLGAVAGAWAYNFIRYTNKPVREITKSASFLKSAPAE* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1774 273 Pfam Major intrinsic protein 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu6g1774 273 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 5 270 - -
Pvu6g1774 273 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu6g1774 273 TIGRFAM MIP: MIP family channel proteins 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu6g1774 273 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu6g1774 273 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu6g1774 273 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu6g1774 273 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu6g1774 273 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu6g1774 273 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu6g1774 273 Gene3D Glycerol uptake facilitator protein. 4 263 IPR023271 -
Pvu6g1774 273 PANTHER AQUAPORIN NIP2-1 5 270 IPR034294 -
Pvu6g1774 273 SUPERFAMILY Aquaporin-like 38 261 IPR023271 -
Pvu6g1774 273 ProSitePatterns MIP family signature. 98 106 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1774 Pvu-Chr6 28183127 28186003 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1774 37 269 Major Intrinsic Protein MIP AT5G37820 63.948 7.39e-104 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1774 K09874 - gmx:100812577 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1774 6 28183127 28186003 Pvu6g1774 6 28183127 28186003 ECH
Pvu2g2492 2 40901599 40903924 Pvu6g1774 6 28183127 28186003 PCT