Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1760 CAGGTTGCAAACATGGCTTTTCCAAACCCATCCATGTCAGTTTCCCCACAGAGGAAGATGGGAAGGGGGAAGATTGAGATCAAGCGGATTGAAAACACCACCAATCGCCAAGTCACCTTCTGTAAGCGCAGAAATGGCTTGCTCAAGAAAGCATATGAATTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATCGTCTTCTCTAGCCGTGGCCGTCTCTATGAATACGCTAATAACAGTGTCAAAGCAACTATTGAGAGGTACAAAAAAGCATGTTCAGATTCGTCTGGTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGATAAACTTCGCGCACAAATAAGTAACATGCAGAATAACAACAGGCAAATGATGGGCGAGTCTTTGGGCTCTATGACAGCCAAGGATCTAAAAAACCTGGAGAGTAAACTAGAAAAAGGAATAAGTAGAATTCGTTCAAAAAAGAACGAGCTGCTATTTGCTGAAATTGAGTACATGCAGAAGAGGGAGATAGATTTGCACAACAACAACCAGCTTCTTCGAGCAAAGATAGCTGAAAGTGAGAGGAGCCAGAATATGGGTGTGTTGGCTGGAGGCACAAGCTATGAGTCTATGCAGTCTCAGCAGGCATTTGACTCTCGTGGCTACTTCCAAGTCACTGGATTACAACCCAATAATCAGTATGCCCGACAAGATCAGATGTCCCTTCAATTAGTATGA 738 0.439 QVANMAFPNPSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSGAGSASEANAQFYQQEADKLRAQISNMQNNNRQMMGESLGSMTAKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERSQNMGVLAGGTSYESMQSQQAFDSRGYFQVTGLQPNNQYARQDQMSLQLV* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1760 245 Gene3D - 32 98 IPR036879 GO:0003677|GO:0046983
Pvu6g1760 245 CDD MADS_MEF2_like 21 90 IPR033896 GO:0000977|GO:0045944
Pvu6g1760 245 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Pvu6g1760 245 MobiDBLite consensus disorder prediction 1 16 - -
Pvu6g1760 245 Coils Coil 106 133 - -
Pvu6g1760 245 Coils Coil 143 163 - -
Pvu6g1760 245 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu6g1760 245 PANTHER AGAMOUSB 14 239 - -
Pvu6g1760 245 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Pvu6g1760 245 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Pvu6g1760 245 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Pvu6g1760 245 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Pvu6g1760 245 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Pvu6g1760 245 PANTHER MADS BOX PROTEIN 14 239 - -
Pvu6g1760 245 Pfam K-box region 104 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu6g1760 245 MobiDBLite consensus disorder prediction 1 21 - -
Pvu6g1760 245 SUPERFAMILY SRF-like 21 92 IPR036879 GO:0003677|GO:0046983
Pvu6g1760 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1760 Pvu-Chr6 28073371 28081210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1760 2 245 MADS-box Gene Family AT3G58780 64.143 5.79e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu6g1760 K-box 6.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1760 K09264 - gmx:732595 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1760 6 28073371 28081210 Pvu6g1760 6 28073371 28081210 ECH
Pvu2g2502 2 40988219 40993833 Pvu6g1760 6 28073371 28081210 PCT