Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1729 ATGGAAGAGGATGAGATTCAAGCACAGGCAGTGTGTAAGTTTCCTAGAGTTGGAAATGGAAGGAGCGAGCAATACCAAGAGGAGGAAGAAGAAGGAGACATAAGAAGAAGAGGTATTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAAGTGATGCTAGTACAAACCATTTCCAAAGCAGTTGGCACCACTCTTCGAGAATCATAAGGGTTTCTCGTGCATCTGGTGGCAAAGACAGGCACAGCAAGGTGATGACTTCAAAGGGGTTAAGAGATAGAAGGGTTAGGCTCTCGGTGACCACAGCCATTCAGTTCTACGACCTTCAAGATCGGTTGGGTTATGACCAACCTAGTAAGGCTGTGGAGTGGTTAATCAATGCTGCTTCAGATGCTATCTCAGAGCTCCCTTCTCTCAACAACCCCTTCCCTGATACCCCTAAGCAGCCAAGTGATGAGAAAAGGCCAACTAGTGGTCAACGTGGTGGTCAACCACAGGCCTTTGACGAGGTAGATGGAGACACCAATTTCCTCCAGCAAAGCCAAAACCAAAGCCAGAACCTCTCTCTCTCCAAGTCCGCTTGTAGCAGCACTTCCGAGACAAGCAAGGGTTCAGGCTTGTCCCTCTCAAGGTCTGAGATCCGTGTGAACCGTGTGAAGGCAAGGGAGAGGGCAAGGGTAAGAGCAGCAAAAGAGAAGGGAAAAGATAGGGACAAGGAGAAAGAGAAAGAGAAAGAGAACGAGTCTGGCGTTGCACACCACCACCACCACCACCACAATGTGAACAACCCCAACCATATGTCTCACACTGCTTCCTTCACTGAGCTTCTCACTGGTGGGATTGGGAGCACAGTAACAGTTAACCCCACCACCACAGCAAGTCCTAACGGATCATCTGTTCATCAGATCCATGAGGGTCATGATGAGGCCAATCTATTCCACAAGGGAAGACAACAACAACATTGGTCTTCAACAGTGACACCAATGGACTACTTCAGCCCAGGAGGCCTCTTGGTGGGACCTTCTTCATCATCTGCAAGAAATCAACACCAACATCAACATCAACATCAATCTTCTTCAGGACAGTTCCAATTGGGACATGCCCTTCCCATCTCACCATTCAGTGGAGAAAACCACTCGGATCAGCTGCAGCATTTTTCCTTCATGCCAGACCACCTTAACATGCCAGCTGTGGTCACTTCTTCTTCTTCTGCTTCTCAGCCCAGCGGGGGTGACAATTACAACCTCAACTTCAGCATCTCTTCGGGCCTTGCTGCTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCCTTTTTGCCTCACCTCCAGAGGTTTCAACCTTTAGACGGATCATCCAATCTACCTTTCTTCATTGGAGCTCCTGCTCCTTCTTCTGCTCCTCCAACCATTGACACCAACAACAATAACAACCACCACCACCTTCAGTTCTCTCCCGTCTTCGATGGCCGCTTGCAACTTTGCTATGGCGATGGAACCAGGCATTCTGACCACAAGGGCAAGGGAAAGAACTAA 1536 0.4941 MEEDEIQAQAVCKFPRVGNGRSEQYQEEEEEGDIRRRGIGGGGGGGGGGGGSDASTNHFQSSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDAISELPSLNNPFPDTPKQPSDEKRPTSGQRGGQPQAFDEVDGDTNFLQQSQNQSQNLSLSKSACSSTSETSKGSGLSLSRSEIRVNRVKARERARVRAAKEKGKDRDKEKEKEKENESGVAHHHHHHHNVNNPNHMSHTASFTELLTGGIGSTVTVNPTTTASPNGSSVHQIHEGHDEANLFHKGRQQQHWSSTVTPMDYFSPGGLLVGPSSSSARNQHQHQHQHQSSSGQFQLGHALPISPFSGENHSDQLQHFSFMPDHLNMPAVVTSSSSASQPSGGDNYNLNFSISSGLAAFNRGTLQSNSPSFLPHLQRFQPLDGSSNLPFFIGAPAPSSAPPTIDTNNNNNHHHLQFSPVFDGRLQLCYGDGTRHSDHKGKGKN* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1729 511 PANTHER TRANSCRIPTION FACTOR TCP24 1 511 - -
Pvu6g1729 511 MobiDBLite consensus disorder prediction 22 37 - -
Pvu6g1729 511 MobiDBLite consensus disorder prediction 339 366 - -
Pvu6g1729 511 Pfam TCP family transcription factor 77 233 IPR017887 -
Pvu6g1729 511 ProSiteProfiles R domain profile. 215 233 IPR017888 -
Pvu6g1729 511 MobiDBLite consensus disorder prediction 215 253 - -
Pvu6g1729 511 MobiDBLite consensus disorder prediction 173 212 - -
Pvu6g1729 511 MobiDBLite consensus disorder prediction 135 265 - -
Pvu6g1729 511 MobiDBLite consensus disorder prediction 339 381 - -
Pvu6g1729 511 ProSiteProfiles TCP domain profile. 78 136 IPR017887 -
Pvu6g1729 511 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 511 IPR005333 GO:0003700
Pvu6g1729 511 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1729 Pvu-Chr6 27724445 27735625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1729 56 511 TCP Transcription Factor Family AT4G18390 41.090 3.84e-71 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pvu6g1729 TCP 1.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1729 - - gmx:100787772 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1729 6 27724445 27735625 Pvu6g1729 6 27724445 27735625 ECH