Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1696 ATGGAGCAGTACGGCCGGTCCAGTGAAGGTTCGCGGTCTGATCCGTCCCCGGAATGGGCCGGGCCCGGAGCCCAAACCGGCCTCGAAGAGCCTATGTGGCAATTGGGAATGGGTGCTGCGGAGGAATCGTATCCGCAACGCCCCGATGAGACTGATTGCACTTACTACTTGAGGACTGGCTTCTGTGGCTTTGGTTCGCGGTGTCGGTTCAATCACCCTCGTGACCGTGGCACGGTTGTTGGAGCTGAGAGGACTGCTGGGGAGTATCCGGAACGAGTTGGCCAGCCTGTCTGCCAGTATTACATGAGGACAAGAACGTGCAAGTTTGGTTCGTCATGCAAGTACCACCACCCGAGGCTAGCGGGAGGTGCTGCTGCCCCTGTGACGCTAAACTATTATGGATATCCATTGCGTCCGGGTGAGAAGGAGTGTTCGTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCGTCCAAATTCCAGCACCATCACCAGTTGCTCCAGTTTCTCCTTTGCCTGTACCAGTGCCTTCACCGTTATATTCAACCATGCAGCCCCCACCTGGTCCTTCATCACAGCAAATTGGTGTGCTGGTTGCAAGGCCTCCTATGCTGCCTGGCTCATTAGTCCAGAGTCCCTATGGACCTGTGGTACTTTCACCTGCCATGGTACCTATTTCTGGCTGGGGTCCTTATCAAGCTTCTGGAACAGGTGCTATACTTCCTTCCGGTACTCCTAATGTTGGTTCAGCACAGCTTTACGGGATTACACAACTACCTTCATCAGCGGCCGGCTATCCTGGACTATATCAACTTCCTGGTTCCTTAGTTGGTCCATCAAGCAGTAATCAGAAGGAGCAGGCATTTCCAGAAAGGTCTAATCAACCAGATTATCAGTATTATCCAAAAACAGGGGAGGTTAAAGTTGGTCCATCCTATAGGTATCACCCTCCAACAGAAATGACTGCACCAAAAGCAAATGTGACTCTTAGTCCTGCAGGTCTTCCTTTGCGCCCGGGTTTTAAATAG 1062 0.5169 MEQYGRSSEGSRSDPSPEWAGPGAQTGLEEPMWQLGMGAAEESYPQRPDETDCTYYLRTGFCGFGSRCRFNHPRDRGTVVGAERTAGEYPERVGQPVCQYYMRTRTCKFGSSCKYHHPRLAGGAAAPVTLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPVPAGVQIPAPSPVAPVSPLPVPVPSPLYSTMQPPPGPSSQQIGVLVARPPMLPGSLVQSPYGPVVLSPAMVPISGWGPYQASGTGAILPSGTPNVGSAQLYGITQLPSSAAGYPGLYQLPGSLVGPSSSNQKEQAFPERSNQPDYQYYPKTGEVKVGPSYRYHPPTEMTAPKANVTLSPAGLPLRPGFK* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1696 353 Gene3D - 45 123 - -
Pvu6g1696 353 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Pvu6g1696 353 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 351 - -
Pvu6g1696 353 Gene3D - 124 171 - -
Pvu6g1696 353 PANTHER PROTEIN PHOSPHATASE RELATED 1 351 - -
Pvu6g1696 353 SUPERFAMILY CCCH zinc finger 48 75 IPR036855 GO:0046872
Pvu6g1696 353 MobiDBLite consensus disorder prediction 289 311 - -
Pvu6g1696 353 SUPERFAMILY CCCH zinc finger 95 118 IPR036855 GO:0046872
Pvu6g1696 353 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Pvu6g1696 353 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Pvu6g1696 353 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Pvu6g1696 353 MobiDBLite consensus disorder prediction 1 31 - -
Pvu6g1696 353 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Pvu6g1696 353 MobiDBLite consensus disorder prediction 289 353 - -
Pvu6g1696 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Pvu6g1696 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 164 IPR000571 GO:0046872
Pvu6g1696 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Pvu6g1696 353 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Pvu6g1696 353 SUPERFAMILY CCCH zinc finger 140 165 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1696 Pvu-Chr6 27427698 27432914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1696 1 351 C2H2 Transcription Factor Family AT5G18550 55.525 1.84e-125 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu6g1696 zf-CCCH 2.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1696 - - gmx:100812433 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1696 6 27427698 27432914 Pvu6g1696 6 27427698 27432914 ECH
Pvu3g1067 3 25189363 25194111 Pvu6g1696 6 27427698 27432914 PCT