Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1694 ATGTCCACCTCTAGAACCTCAGATGTTTCCCTCAAAGGATATGAGTCAAACCCAACCCAAATGAATTTGTCTCTTCTTCAACGTAACACCTCAACTTGTGGTGAGAGAAGAGGGCGAGGAAAGCAAGCAGAACCAGGAAGGTTTCTCGGGGTGAGAAGAAGGCCTTGGGGTAGATATGCTGCTGAAATCAGAAACCCTTTAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTGAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGATGCCAAGCAAGAACCAACTTTGTATACTCTAAAGATACCAACATTTTCCACAATGCTCTAACTCCTTTCAATGCTCAACCTCTCTTGCCACCTTCACATAACACTCACAACAACATACAACTAACCAATCAAAGTAGCCTATCTCACCTTGCTACTTTCACTTCCCACATTCAAAACCCTTCTGACTTATATGCTGACACTGCTCTTGGGTCACCTCAGGATGATAATTTCTTCTTCTCCAGTGACTCTAACTCTGGCTATCTTGAATGCATAGTTCCCGGTAACTGTTTCAAGAAGGGCAATGCCAGTGCTTCAGGTCACGTTAACTCAAACTCCATGCAGGTTCAGCCACATTTTGACACCTCTGAAGAAGCCTTGAACATGCAAGCAACAGTGGCCCTTAGCTATGCAGATACTTCTTGCCCAAGTGATCTTGGTAAAGGATTATGGGATAATCATCAATCATGGGATTGCAGTTCCAATGAACTAGCAGCTATGTTTAAAAATCCATCAAGGATTGTTGAGGAAGGGTGCATGGATGCATTGCATCCCTTCACTGATAGCTCAAACTACGGGCTAATGAGTCAGGTGGTTTCTTCAACAACATATTCTCCATCAGTTCCTCCCTTTGGCAATGTTGGCTCGGGATACTCACCCTTCTGA 951 0.4395 MSTSRTSDVSLKGYESNPTQMNLSLLQRNTSTCGERRGRGKQAEPGRFLGVRRRPWGRYAAEIRNPLTKERHWLGTFDTAEEAALAYDRAALSMKGCQARTNFVYSKDTNIFHNALTPFNAQPLLPPSHNTHNNIQLTNQSSLSHLATFTSHIQNPSDLYADTALGSPQDDNFFFSSDSNSGYLECIVPGNCFKKGNASASGHVNSNSMQVQPHFDTSEEALNMQATVALSYADTSCPSDLGKGLWDNHQSWDCSSNELAAMFKNPSRIVEEGCMDALHPFTDSSNYGLMSQVVSSTTYSPSVPPFGNVGSGYSPF* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1694 316 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Pvu6g1694 316 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 316 - -
Pvu6g1694 316 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Pvu6g1694 316 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Pvu6g1694 316 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Pvu6g1694 316 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 316 - -
Pvu6g1694 316 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Pvu6g1694 316 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Pvu6g1694 316 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Pvu6g1694 316 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1694 Pvu-Chr6 27418948 27419898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1694 1 194 AP2-EREBP Transcription Factor Family AT5G18560 47.200 3.64e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu6g1694 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1694 - - var:108341653 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1066 3 25181566 25183062 Pvu6g1694 6 27418948 27419898 PCT